Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29603 | 3' | -59.4 | NC_006151.1 | + | 5611 | 0.69 | 0.568813 |
Target: 5'- cCCUCCG-GCGGaggggGCGCCgccgCCgccgGGCg -3' miRNA: 3'- aGGAGGCuCGCCa----UGUGGa---GGa---CCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 15027 | 0.67 | 0.708791 |
Target: 5'- aCC-CCGAGgaGGUGCGCgUCCacGGCg -3' miRNA: 3'- aGGaGGCUCg-CCAUGUGgAGGa-CCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 18302 | 0.69 | 0.558914 |
Target: 5'- gUCgaagCCgGAGCGGgGCGCCUCCUcggGGCg -3' miRNA: 3'- aGGa---GG-CUCGCCaUGUGGAGGA---CCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 24302 | 0.66 | 0.766307 |
Target: 5'- -aCUCCucGgGGUGCACC-CCgagGGCg -3' miRNA: 3'- agGAGGcuCgCCAUGUGGaGGa--CCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 28100 | 0.68 | 0.618826 |
Target: 5'- gUCCU-CGAGCGGggcGCGgCUCCUcgucGGCUc -3' miRNA: 3'- -AGGAgGCUCGCCa--UGUgGAGGA----CCGA- -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 40243 | 0.7 | 0.491294 |
Target: 5'- cUCCgCUGAGCGGgGCGCCcCCUcGGCc -3' miRNA: 3'- -AGGaGGCUCGCCaUGUGGaGGA-CCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 53966 | 0.68 | 0.608776 |
Target: 5'- gCCagCG-GCGGcgGCGCCUCCgcgGGCg -3' miRNA: 3'- aGGagGCuCGCCa-UGUGGAGGa--CCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 57652 | 0.67 | 0.707808 |
Target: 5'- gCCagCgCGAugacgcuGUGGUACGCCUCCgGGCa -3' miRNA: 3'- aGGa-G-GCU-------CGCCAUGUGGAGGaCCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 58963 | 0.7 | 0.539269 |
Target: 5'- cCCUCgGugcGCGGccACGCCUCCgcgGGCa -3' miRNA: 3'- aGGAGgCu--CGCCa-UGUGGAGGa--CCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 66993 | 0.67 | 0.708791 |
Target: 5'- aUCCUCaugcacGCGGUGUACUUUCUGGCc -3' miRNA: 3'- -AGGAGgcu---CGCCAUGUGGAGGACCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 68379 | 0.73 | 0.361364 |
Target: 5'- gUCCUCCGucagggccGCGGc-CACCUCCaUGGCg -3' miRNA: 3'- -AGGAGGCu-------CGCCauGUGGAGG-ACCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 72754 | 0.66 | 0.747503 |
Target: 5'- gCCgagUCGcuggcgcacagcGGCgGGUACGCCUCCUGGa- -3' miRNA: 3'- aGGa--GGC------------UCG-CCAUGUGGAGGACCga -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 73095 | 0.68 | 0.628886 |
Target: 5'- cCCUCCucGCcGUGCACCUCgCcGGCg -3' miRNA: 3'- aGGAGGcuCGcCAUGUGGAG-GaCCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 81188 | 0.71 | 0.481932 |
Target: 5'- gCCgCCGAGCGuGUACGCCgggccgcagUCCgGGCg -3' miRNA: 3'- aGGaGGCUCGC-CAUGUGG---------AGGaCCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 81663 | 0.68 | 0.608776 |
Target: 5'- uUCCcCCGcacggagcGGCGGUACGCCUC--GGCg -3' miRNA: 3'- -AGGaGGC--------UCGCCAUGUGGAGgaCCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 84931 | 0.68 | 0.653024 |
Target: 5'- gCCUCCGGcgugcucuucggcacGUGGUACGCCacgcUCCaGGCc -3' miRNA: 3'- aGGAGGCU---------------CGCCAUGUGG----AGGaCCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 92463 | 0.67 | 0.679066 |
Target: 5'- gUCCUCgCGAGCcugggGGUGgACUacucggaguUCCUGGCc -3' miRNA: 3'- -AGGAG-GCUCG-----CCAUgUGG---------AGGACCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 97620 | 0.67 | 0.676071 |
Target: 5'- aCCUgCGAGCGGcgcgcggccaUGucguuggugcgcgcCGCCUCCUGGUc -3' miRNA: 3'- aGGAgGCUCGCC----------AU--------------GUGGAGGACCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 98372 | 0.67 | 0.679066 |
Target: 5'- -gCUCUGGGCGcGcGCGCUgcgCCUGGCc -3' miRNA: 3'- agGAGGCUCGC-CaUGUGGa--GGACCGa -5' |
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29603 | 3' | -59.4 | NC_006151.1 | + | 98614 | 0.73 | 0.380502 |
Target: 5'- gCCUCgugagCGAGUGGUGCGCCgccuucgacgaggcCCUGGCg -3' miRNA: 3'- aGGAG-----GCUCGCCAUGUGGa-------------GGACCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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