miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29603 5' -60.6 NC_006151.1 + 138702 0.66 0.686375
Target:  5'- --cGCUGAGcccGGCGCugcgcgccGCGCGCGGGu -3'
miRNA:   3'- cuuCGGCUCca-CCGCG--------UGCGCGUCCu -5'
29603 5' -60.6 NC_006151.1 + 103318 0.66 0.686375
Target:  5'- cGAcGCCGAGcu-GCGCACGCugguGCAGGc -3'
miRNA:   3'- -CUuCGGCUCcacCGCGUGCG----CGUCCu -5'
29603 5' -60.6 NC_006151.1 + 29601 0.66 0.676435
Target:  5'- -cGGCCGcGGcggcgGGgGCugGUGUGGGAg -3'
miRNA:   3'- cuUCGGCuCCa----CCgCGugCGCGUCCU- -5'
29603 5' -60.6 NC_006151.1 + 34990 0.66 0.676435
Target:  5'- -uGGCCGAGGgcGGC-CACGUGgGGcGAg -3'
miRNA:   3'- cuUCGGCUCCa-CCGcGUGCGCgUC-CU- -5'
29603 5' -60.6 NC_006151.1 + 95043 0.66 0.676435
Target:  5'- cGAAGCCGucgaAGG-GGCGCAggcCGCGCu--- -3'
miRNA:   3'- -CUUCGGC----UCCaCCGCGU---GCGCGuccu -5'
29603 5' -60.6 NC_006151.1 + 30233 0.66 0.676435
Target:  5'- aGGGcCCGGGGUuGCGC-CG-GCGGGAg -3'
miRNA:   3'- cUUC-GGCUCCAcCGCGuGCgCGUCCU- -5'
29603 5' -60.6 NC_006151.1 + 3107 0.66 0.66646
Target:  5'- aGAGGCCGccGcGGCGCgggucccaggccGgGCGCGGGGc -3'
miRNA:   3'- -CUUCGGCucCaCCGCG------------UgCGCGUCCU- -5'
29603 5' -60.6 NC_006151.1 + 19045 0.66 0.66646
Target:  5'- --cGCCGGGuccaccgGGCGCaggcacucgggcGCGCGCGGGu -3'
miRNA:   3'- cuuCGGCUCca-----CCGCG------------UGCGCGUCCu -5'
29603 5' -60.6 NC_006151.1 + 19870 0.66 0.66646
Target:  5'- cGggGCCucGGUGGagaGCGCcagggccagcaGCGcCAGGAg -3'
miRNA:   3'- -CuuCGGcuCCACCg--CGUG-----------CGC-GUCCU- -5'
29603 5' -60.6 NC_006151.1 + 62047 0.66 0.66646
Target:  5'- --cGCCGcguGGcGGUGCACGCGCGc-- -3'
miRNA:   3'- cuuCGGCu--CCaCCGCGUGCGCGUccu -5'
29603 5' -60.6 NC_006151.1 + 76627 0.66 0.66646
Target:  5'- -uGGCCGGGcgcuccaucguGUGGCGacgacCGCGUGCGGGc -3'
miRNA:   3'- cuUCGGCUC-----------CACCGC-----GUGCGCGUCCu -5'
29603 5' -60.6 NC_006151.1 + 98026 0.66 0.66646
Target:  5'- cAGGUccgCGGGGUGGCGCA-GCGCGa-- -3'
miRNA:   3'- cUUCG---GCUCCACCGCGUgCGCGUccu -5'
29603 5' -60.6 NC_006151.1 + 117253 0.66 0.66646
Target:  5'- cGGGcCCGAGGcgcgGGC-CGCGCGCGGc- -3'
miRNA:   3'- cUUC-GGCUCCa---CCGcGUGCGCGUCcu -5'
29603 5' -60.6 NC_006151.1 + 17400 0.66 0.66646
Target:  5'- cGggGCgc--GUGGCGCGCGgcaGCAGGGc -3'
miRNA:   3'- -CuuCGgcucCACCGCGUGCg--CGUCCU- -5'
29603 5' -60.6 NC_006151.1 + 118782 0.66 0.656458
Target:  5'- -uGGaCGcGGUGGCGCGCGgCGCGGc- -3'
miRNA:   3'- cuUCgGCuCCACCGCGUGC-GCGUCcu -5'
29603 5' -60.6 NC_006151.1 + 29461 0.66 0.656458
Target:  5'- --cGCgGAGG-GaGCGgGCGCGcCGGGAg -3'
miRNA:   3'- cuuCGgCUCCaC-CGCgUGCGC-GUCCU- -5'
29603 5' -60.6 NC_006151.1 + 31431 0.66 0.656458
Target:  5'- gGggGaCGGGGUGcGCGCGCGUGUg--- -3'
miRNA:   3'- -CuuCgGCUCCAC-CGCGUGCGCGuccu -5'
29603 5' -60.6 NC_006151.1 + 67287 0.66 0.656458
Target:  5'- --cGCCGcuGGUGccGCGaCGCGCGCGuGGAc -3'
miRNA:   3'- cuuCGGCu-CCAC--CGC-GUGCGCGU-CCU- -5'
29603 5' -60.6 NC_006151.1 + 97235 0.66 0.646438
Target:  5'- cGAGuuCCG-GGUGGCGCGgcCGCGCAugucGGGg -3'
miRNA:   3'- cUUC--GGCuCCACCGCGU--GCGCGU----CCU- -5'
29603 5' -60.6 NC_006151.1 + 115170 0.66 0.646438
Target:  5'- cGAAGCCGcgcggcAGGgGGCGCuccagccagcGCGCcGCGGGc -3'
miRNA:   3'- -CUUCGGC------UCCaCCGCG----------UGCG-CGUCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.