miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29604 3' -55.8 NC_006151.1 + 39158 0.66 0.865663
Target:  5'- -cGccGCGGCGGccucUCGGCg-CUGCUCg -3'
miRNA:   3'- aaCuuCGUCGCCu---AGUCGagGACGAG- -5'
29604 3' -55.8 NC_006151.1 + 59736 0.66 0.865663
Target:  5'- gUUGGcgAGCGcGCGcagCAGCUCCUGCa- -3'
miRNA:   3'- -AACU--UCGU-CGCcuaGUCGAGGACGag -5'
29604 3' -55.8 NC_006151.1 + 128014 0.66 0.841387
Target:  5'- -cGggGCGGCGGcgaCGGCgUCUGCg- -3'
miRNA:   3'- aaCuuCGUCGCCua-GUCGaGGACGag -5'
29604 3' -55.8 NC_006151.1 + 54639 0.66 0.841387
Target:  5'- -gGAAGCGGCGGcgCgAGCg-CUGCg- -3'
miRNA:   3'- aaCUUCGUCGCCuaG-UCGagGACGag -5'
29604 3' -55.8 NC_006151.1 + 31583 0.66 0.841387
Target:  5'- -cGggGgGGCGGcgC-GCUCCgcGCUCc -3'
miRNA:   3'- aaCuuCgUCGCCuaGuCGAGGa-CGAG- -5'
29604 3' -55.8 NC_006151.1 + 141639 0.66 0.832878
Target:  5'- cUGccGCGGCGGcgCGGCggggCCccgcggGCUCg -3'
miRNA:   3'- aACuuCGUCGCCuaGUCGa---GGa-----CGAG- -5'
29604 3' -55.8 NC_006151.1 + 131021 0.66 0.832878
Target:  5'- -cGgcGUAGCGGGUgaaGGcCUCCcGCUCg -3'
miRNA:   3'- aaCuuCGUCGCCUAg--UC-GAGGaCGAG- -5'
29604 3' -55.8 NC_006151.1 + 20483 0.67 0.824173
Target:  5'- -gGggGC-GCGGGggucgucggCGGCUCUgGCUCg -3'
miRNA:   3'- aaCuuCGuCGCCUa--------GUCGAGGaCGAG- -5'
29604 3' -55.8 NC_006151.1 + 28105 0.67 0.815281
Target:  5'- --cGAGCGG-GGcgCGGCUCCUcgucgGCUCg -3'
miRNA:   3'- aacUUCGUCgCCuaGUCGAGGA-----CGAG- -5'
29604 3' -55.8 NC_006151.1 + 105744 0.67 0.778025
Target:  5'- cUGAAGCAGCGcGuggCGGCgcgCCUGggCg -3'
miRNA:   3'- aACUUCGUCGC-Cua-GUCGa--GGACgaG- -5'
29604 3' -55.8 NC_006151.1 + 13109 0.68 0.768337
Target:  5'- -gGucGCGGCGGGUCAcgcgcGCUCCcGCg- -3'
miRNA:   3'- aaCuuCGUCGCCUAGU-----CGAGGaCGag -5'
29604 3' -55.8 NC_006151.1 + 100958 0.68 0.758519
Target:  5'- gUGGGuGCccGUGGAUCGGCUCCUGg-- -3'
miRNA:   3'- aACUU-CGu-CGCCUAGUCGAGGACgag -5'
29604 3' -55.8 NC_006151.1 + 22754 0.69 0.707836
Target:  5'- -cGAGGgAGCGGAUguggCGGCUCUucUGCUg -3'
miRNA:   3'- aaCUUCgUCGCCUA----GUCGAGG--ACGAg -5'
29604 3' -55.8 NC_006151.1 + 64814 0.7 0.623672
Target:  5'- -gGAAGcCGGCGGc-CAGCUCCUcCUCg -3'
miRNA:   3'- aaCUUC-GUCGCCuaGUCGAGGAcGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.