miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29604 5' -58.3 NC_006151.1 + 117072 0.66 0.811922
Target:  5'- uCGAGcagcAGGCGCguggucgcgUCCACG-CCGGcCUCGu -3'
miRNA:   3'- cGCUC----UCCGCG---------AGGUGCaGGCU-GAGC- -5'
29604 5' -58.3 NC_006151.1 + 137410 0.66 0.811922
Target:  5'- cCGGGGGGCGCccucgCCGCcgccgcgggGUCCGcCUCc -3'
miRNA:   3'- cGCUCUCCGCGa----GGUG---------CAGGCuGAGc -5'
29604 5' -58.3 NC_006151.1 + 21321 0.67 0.803321
Target:  5'- cGCGAGAcgcccGGCGCggcgggggUCCGCGgcuggaaCGGCUCc -3'
miRNA:   3'- -CGCUCU-----CCGCG--------AGGUGCag-----GCUGAGc -5'
29604 5' -58.3 NC_006151.1 + 69133 0.67 0.803321
Target:  5'- cGCGGGcagggcgcgcGGGUGCUCgACG-CCGugccGCUCGc -3'
miRNA:   3'- -CGCUC----------UCCGCGAGgUGCaGGC----UGAGC- -5'
29604 5' -58.3 NC_006151.1 + 32143 0.67 0.803321
Target:  5'- aGCGAGGGGCGCgagCGCuUCCucCUCc -3'
miRNA:   3'- -CGCUCUCCGCGag-GUGcAGGcuGAGc -5'
29604 5' -58.3 NC_006151.1 + 115037 0.67 0.801582
Target:  5'- uGCGGcAGGCGCguguugcuguaCGCGUCCGgggggcggcugaGCUCGg -3'
miRNA:   3'- -CGCUcUCCGCGag---------GUGCAGGC------------UGAGC- -5'
29604 5' -58.3 NC_006151.1 + 98622 0.67 0.794572
Target:  5'- aGCGAGuGGUGCgCCGCcUUCGACg-- -3'
miRNA:   3'- -CGCUCuCCGCGaGGUGcAGGCUGagc -5'
29604 5' -58.3 NC_006151.1 + 7060 0.67 0.794572
Target:  5'- cGCGcGGAGGCGuCUcCCGCGcgccUCUGAUUUGc -3'
miRNA:   3'- -CGC-UCUCCGC-GA-GGUGC----AGGCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 106670 0.67 0.794572
Target:  5'- cGCGAGGccgcGGCGCUCgGCGcgccgggcgCCGGCg-- -3'
miRNA:   3'- -CGCUCU----CCGCGAGgUGCa--------GGCUGagc -5'
29604 5' -58.3 NC_006151.1 + 72733 0.67 0.794572
Target:  5'- cCGAGGGGCG-UCCGCagcagcgCCGAgUCGc -3'
miRNA:   3'- cGCUCUCCGCgAGGUGca-----GGCUgAGC- -5'
29604 5' -58.3 NC_006151.1 + 80345 0.67 0.785684
Target:  5'- gGCGAG-GGCgGCUCUcCGcCCGuCUCa -3'
miRNA:   3'- -CGCUCuCCG-CGAGGuGCaGGCuGAGc -5'
29604 5' -58.3 NC_006151.1 + 81507 0.67 0.785684
Target:  5'- gGCGAGAGcGCgGC-CCGCGUgaG-CUCGg -3'
miRNA:   3'- -CGCUCUC-CG-CGaGGUGCAggCuGAGC- -5'
29604 5' -58.3 NC_006151.1 + 21498 0.67 0.785684
Target:  5'- cCGGGGGGCGCgggcgUCAcCGgggCgGGCUCGg -3'
miRNA:   3'- cGCUCUCCGCGa----GGU-GCa--GgCUGAGC- -5'
29604 5' -58.3 NC_006151.1 + 114904 0.67 0.785684
Target:  5'- cGCGAGgcccGGGCGCacggCCccgGCGUCgCG-CUCGg -3'
miRNA:   3'- -CGCUC----UCCGCGa---GG---UGCAG-GCuGAGC- -5'
29604 5' -58.3 NC_006151.1 + 127856 0.67 0.785684
Target:  5'- uGCGccggaGGGGGCGCcgcccgccgccgUCCAccuccagcucguCGUCCGAgCUCGg -3'
miRNA:   3'- -CGC-----UCUCCGCG------------AGGU------------GCAGGCU-GAGC- -5'
29604 5' -58.3 NC_006151.1 + 89133 0.67 0.776665
Target:  5'- gGCGGGAccgggGGCGUcgagaCCGCGcCCGcCUCGg -3'
miRNA:   3'- -CGCUCU-----CCGCGa----GGUGCaGGCuGAGC- -5'
29604 5' -58.3 NC_006151.1 + 88126 0.67 0.776665
Target:  5'- aGCGGGcGGGCGCUCCgcACGUUgagcaGGC-CGg -3'
miRNA:   3'- -CGCUC-UCCGCGAGG--UGCAGg----CUGaGC- -5'
29604 5' -58.3 NC_006151.1 + 87071 0.67 0.776665
Target:  5'- -gGGGAGGCGCcgccccCCGCGagCGAcCUCGc -3'
miRNA:   3'- cgCUCUCCGCGa-----GGUGCagGCU-GAGC- -5'
29604 5' -58.3 NC_006151.1 + 117299 0.67 0.775756
Target:  5'- cGCGAGcugcucGGCGCUcgCCACG-CCGAgggcggcgucggcCUCGg -3'
miRNA:   3'- -CGCUCu-----CCGCGA--GGUGCaGGCU-------------GAGC- -5'
29604 5' -58.3 NC_006151.1 + 59135 0.67 0.774846
Target:  5'- gGUGGGuGGCGC-CCGCGggcggguccaggCCGGCgUCGc -3'
miRNA:   3'- -CGCUCuCCGCGaGGUGCa-----------GGCUG-AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.