miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 3' -54.8 NC_006151.1 + 72261 0.83 0.185233
Target:  5'- gCCGACGCCGaGCgGCGUgGCCAGCaUGCg -3'
miRNA:   3'- -GGUUGCGGC-CGgCGUAgUGGUUG-AUG- -5'
29605 3' -54.8 NC_006151.1 + 99929 0.78 0.354283
Target:  5'- aCGGCGCCGGCCuCAUCcCCAACgucaGCg -3'
miRNA:   3'- gGUUGCGGCCGGcGUAGuGGUUGa---UG- -5'
29605 3' -54.8 NC_006151.1 + 117096 0.77 0.412837
Target:  5'- uCC-ACGCCGGCCucguGCGUCACCAGgCcgGCg -3'
miRNA:   3'- -GGuUGCGGCCGG----CGUAGUGGUU-Ga-UG- -5'
29605 3' -54.8 NC_006151.1 + 36563 0.77 0.412837
Target:  5'- gCAGCGgUGGCCGCAgCGCCGGCacgGCg -3'
miRNA:   3'- gGUUGCgGCCGGCGUaGUGGUUGa--UG- -5'
29605 3' -54.8 NC_006151.1 + 52821 0.76 0.448867
Target:  5'- gCCGGCGuuGGCCGCGa-GCCAGCg-- -3'
miRNA:   3'- -GGUUGCggCCGGCGUagUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 92647 0.76 0.448867
Target:  5'- gCGACGCCGGCaagGCGcUCGCCcuGCUGCc -3'
miRNA:   3'- gGUUGCGGCCGg--CGU-AGUGGu-UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 50887 0.75 0.467522
Target:  5'- cCCGGgGCCGGCCGCGcccccCGCCuccuguuGCUACc -3'
miRNA:   3'- -GGUUgCGGCCGGCGUa----GUGGu------UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 54554 0.75 0.467522
Target:  5'- uCCAACgGCaCGGCCaGCuUCGCCAAgUACa -3'
miRNA:   3'- -GGUUG-CG-GCCGG-CGuAGUGGUUgAUG- -5'
29605 3' -54.8 NC_006151.1 + 104379 0.75 0.505974
Target:  5'- gCCGcucucGCgGCUGGcCCGCAUCGCCGGCgGCg -3'
miRNA:   3'- -GGU-----UG-CGGCC-GGCGUAGUGGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 85618 0.75 0.505974
Target:  5'- cCCAacGCGCCGccGCCGCGcggCGCCAGCggggACg -3'
miRNA:   3'- -GGU--UGCGGC--CGGCGUa--GUGGUUGa---UG- -5'
29605 3' -54.8 NC_006151.1 + 128687 0.74 0.525704
Target:  5'- aCAACG-UGGCCGCGUaCGCCAGCa-- -3'
miRNA:   3'- gGUUGCgGCCGGCGUA-GUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 125461 0.74 0.535678
Target:  5'- cCCAGCGCCguggccacGGCCGCGcUCgGCCAGCg-- -3'
miRNA:   3'- -GGUUGCGG--------CCGGCGU-AG-UGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 121941 0.74 0.545717
Target:  5'- -gGGCGCUGGCCGC--CGCCGGCgACg -3'
miRNA:   3'- ggUUGCGGCCGGCGuaGUGGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 50338 0.74 0.54975
Target:  5'- cCCGGCGCCuGGCCGCGgccucccgccgcgucUCcGCCGGCggggGCg -3'
miRNA:   3'- -GGUUGCGG-CCGGCGU---------------AG-UGGUUGa---UG- -5'
29605 3' -54.8 NC_006151.1 + 136152 0.74 0.565969
Target:  5'- cCCAgACGCUGGCCGCcuuccggCGCCu-CUACg -3'
miRNA:   3'- -GGU-UGCGGCCGGCGua-----GUGGuuGAUG- -5'
29605 3' -54.8 NC_006151.1 + 68087 0.73 0.576169
Target:  5'- gCAGCGCCucgaGGCuCGCGUCGCCcAGCgucagGCg -3'
miRNA:   3'- gGUUGCGG----CCG-GCGUAGUGG-UUGa----UG- -5'
29605 3' -54.8 NC_006151.1 + 106377 0.73 0.576169
Target:  5'- --cGCGCCcGCCGCggCGCCcGCUGCg -3'
miRNA:   3'- gguUGCGGcCGGCGuaGUGGuUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 96596 0.73 0.576169
Target:  5'- -aGGCGCCGGgCGCGggcgCGCCGACg-- -3'
miRNA:   3'- ggUUGCGGCCgGCGUa---GUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 119768 0.73 0.58641
Target:  5'- aCGugGCCGGCgCGCG-CAUCGGCgagACg -3'
miRNA:   3'- gGUugCGGCCG-GCGUaGUGGUUGa--UG- -5'
29605 3' -54.8 NC_006151.1 + 61441 0.73 0.58641
Target:  5'- gCGGCGCCcGcCCGCGUCcgccGCCAugUGCg -3'
miRNA:   3'- gGUUGCGGcC-GGCGUAG----UGGUugAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.