miRNA display CGI


Results 1 - 20 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 3' -54.8 NC_006151.1 + 72261 0.83 0.185233
Target:  5'- gCCGACGCCGaGCgGCGUgGCCAGCaUGCg -3'
miRNA:   3'- -GGUUGCGGC-CGgCGUAgUGGUUG-AUG- -5'
29605 3' -54.8 NC_006151.1 + 59224 0.66 0.943018
Target:  5'- cCCGGgaacgucUGCCGGCUGCG--GCCGACg-- -3'
miRNA:   3'- -GGUU-------GCGGCCGGCGUagUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 64289 0.66 0.943018
Target:  5'- -gAGCGCCGcguugucgggcguGCCGCAgcgCGCCGuGCUGg -3'
miRNA:   3'- ggUUGCGGC-------------CGGCGUa--GUGGU-UGAUg -5'
29605 3' -54.8 NC_006151.1 + 66576 0.66 0.941631
Target:  5'- cCCGGCGCucgcgcgcgCGGCCGaggcgcucgacuUCGCCGcCUACg -3'
miRNA:   3'- -GGUUGCG---------GCCGGCgu----------AGUGGUuGAUG- -5'
29605 3' -54.8 NC_006151.1 + 97421 0.66 0.940695
Target:  5'- gUCGACgcgcguGCCGGCCaggaggaagcugaggGCGUCGCCgAGCUcggGCa -3'
miRNA:   3'- -GGUUG------CGGCCGG---------------CGUAGUGG-UUGA---UG- -5'
29605 3' -54.8 NC_006151.1 + 125269 0.66 0.938793
Target:  5'- cCCGAgcCGCCGGCCGuCAacggCACgGGgcacCUGCg -3'
miRNA:   3'- -GGUU--GCGGCCGGC-GUa---GUGgUU----GAUG- -5'
29605 3' -54.8 NC_006151.1 + 39009 0.66 0.938793
Target:  5'- nCGGCGCCccgcuccGCCGCcgCGCCGcCUGg -3'
miRNA:   3'- gGUUGCGGc------CGGCGuaGUGGUuGAUg -5'
29605 3' -54.8 NC_006151.1 + 90883 0.66 0.938793
Target:  5'- cUCGGCGuucCCGGcCCGCAgccgCugCAGCaGCg -3'
miRNA:   3'- -GGUUGC---GGCC-GGCGUa---GugGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 49342 0.66 0.938793
Target:  5'- gCCugcGCGCCGGacCCGCGcCGCCAcaaGgUGCu -3'
miRNA:   3'- -GGu--UGCGGCC--GGCGUaGUGGU---UgAUG- -5'
29605 3' -54.8 NC_006151.1 + 141232 0.66 0.943476
Target:  5'- gCAGCGaCGGCUGCAcCACgGAggGCg -3'
miRNA:   3'- gGUUGCgGCCGGCGUaGUGgUUgaUG- -5'
29605 3' -54.8 NC_006151.1 + 57395 0.66 0.943476
Target:  5'- aCCAG-GCCagGGCCGCGUCGaaGACg-- -3'
miRNA:   3'- -GGUUgCGG--CCGGCGUAGUggUUGaug -5'
29605 3' -54.8 NC_006151.1 + 58677 0.66 0.943476
Target:  5'- gCCAugaccGCGCCGuGCgCGCcgCGCCAcaGCg-- -3'
miRNA:   3'- -GGU-----UGCGGC-CG-GCGuaGUGGU--UGaug -5'
29605 3' -54.8 NC_006151.1 + 46800 0.66 0.943476
Target:  5'- cUCGAUGCgGcGCC-CGUCGCCcuCUGCc -3'
miRNA:   3'- -GGUUGCGgC-CGGcGUAGUGGuuGAUG- -5'
29605 3' -54.8 NC_006151.1 + 36656 0.66 0.943476
Target:  5'- cCCucCGCCGGaggggaCCGCGgucgucaccaUCACCAGCa-- -3'
miRNA:   3'- -GGuuGCGGCC------GGCGU----------AGUGGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 139638 0.66 0.943476
Target:  5'- uCCGGCGCCGGCgCGgggGUCG-CGGCggGCg -3'
miRNA:   3'- -GGUUGCGGCCG-GCg--UAGUgGUUGa-UG- -5'
29605 3' -54.8 NC_006151.1 + 138913 0.66 0.943476
Target:  5'- gCGAgcgUGCUcGCCGCcacgGUCAUCGGCUGCa -3'
miRNA:   3'- gGUU---GCGGcCGGCG----UAGUGGUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 115223 0.66 0.943476
Target:  5'- aUCGugGCCGcuGCCGCcgagacggccucGUCGCCAAagaGCa -3'
miRNA:   3'- -GGUugCGGC--CGGCG------------UAGUGGUUga-UG- -5'
29605 3' -54.8 NC_006151.1 + 113552 0.66 0.943476
Target:  5'- gCGcCGCgGGcCCGCG-CGCCGuCUACa -3'
miRNA:   3'- gGUuGCGgCC-GGCGUaGUGGUuGAUG- -5'
29605 3' -54.8 NC_006151.1 + 104425 0.66 0.943476
Target:  5'- gCCGcCGCCGGCauggggCGCuUCAgCuACUACg -3'
miRNA:   3'- -GGUuGCGGCCG------GCGuAGUgGuUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 71997 0.66 0.943476
Target:  5'- gUAGCGCCGGCCGUu--GCUgaaGACcACg -3'
miRNA:   3'- gGUUGCGGCCGGCGuagUGG---UUGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.