miRNA display CGI


Results 21 - 40 of 279 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 3' -54.8 NC_006151.1 + 39009 0.66 0.938793
Target:  5'- nCGGCGCCccgcuccGCCGCcgCGCCGcCUGg -3'
miRNA:   3'- gGUUGCGGc------CGGCGuaGUGGUuGAUg -5'
29605 3' -54.8 NC_006151.1 + 125269 0.66 0.938793
Target:  5'- cCCGAgcCGCCGGCCGuCAacggCACgGGgcacCUGCg -3'
miRNA:   3'- -GGUU--GCGGCCGGC-GUa---GUGgUU----GAUG- -5'
29605 3' -54.8 NC_006151.1 + 113125 0.66 0.937341
Target:  5'- gCgGACGCCGccgggcccggcuacGCCGaCcUCGCCAuGCUGCu -3'
miRNA:   3'- -GgUUGCGGC--------------CGGC-GuAGUGGU-UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 118333 0.66 0.933868
Target:  5'- gCAGCGCCGcGCCcGCccucUCGCgCGcCUGCg -3'
miRNA:   3'- gGUUGCGGC-CGG-CGu---AGUG-GUuGAUG- -5'
29605 3' -54.8 NC_006151.1 + 90094 0.66 0.933868
Target:  5'- cCCGccGCGCCgcaGGCCGCGgcgaCGCCcauGACgagGCa -3'
miRNA:   3'- -GGU--UGCGG---CCGGCGUa---GUGG---UUGa--UG- -5'
29605 3' -54.8 NC_006151.1 + 2957 0.66 0.933868
Target:  5'- aCGGCGCCGGCgaaGCcgaggucccgCGCCGAgaGCa -3'
miRNA:   3'- gGUUGCGGCCGg--CGua--------GUGGUUgaUG- -5'
29605 3' -54.8 NC_006151.1 + 114136 0.66 0.933868
Target:  5'- gCCGcCGCCGaGCCGCGgcucgggcgCAgCGACcGCg -3'
miRNA:   3'- -GGUuGCGGC-CGGCGUa--------GUgGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 60911 0.66 0.930796
Target:  5'- uCC-ACGCgGGCCaGUcgCGCCAuggugggcgaguagaGCUGCc -3'
miRNA:   3'- -GGuUGCGgCCGG-CGuaGUGGU---------------UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 57606 0.66 0.9287
Target:  5'- gCCGGCcUCGGCCGCGgcCGCCucGACgGCg -3'
miRNA:   3'- -GGUUGcGGCCGGCGUa-GUGG--UUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 68155 0.66 0.9287
Target:  5'- gUCGugGUcaCGGCCGC--CACCAGCgcguagGCg -3'
miRNA:   3'- -GGUugCG--GCCGGCGuaGUGGUUGa-----UG- -5'
29605 3' -54.8 NC_006151.1 + 74022 0.66 0.9287
Target:  5'- uCguGCGCuCGGCCauguuCGUCACCGucucCUGCa -3'
miRNA:   3'- -GguUGCG-GCCGGc----GUAGUGGUu---GAUG- -5'
29605 3' -54.8 NC_006151.1 + 114984 0.66 0.9287
Target:  5'- -uGACGCuCGGCaccuccccguggCGCAUgGCCAGCUu- -3'
miRNA:   3'- ggUUGCG-GCCG------------GCGUAgUGGUUGAug -5'
29605 3' -54.8 NC_006151.1 + 136760 0.66 0.9287
Target:  5'- gCCucGCcCCGGCCaugggCGCCGGCUACg -3'
miRNA:   3'- -GGu-UGcGGCCGGcgua-GUGGUUGAUG- -5'
29605 3' -54.8 NC_006151.1 + 45790 0.66 0.9287
Target:  5'- cCCcuCGCCaccGCCGCAgCGCCugucACUGCc -3'
miRNA:   3'- -GGuuGCGGc--CGGCGUaGUGGu---UGAUG- -5'
29605 3' -54.8 NC_006151.1 + 48743 0.66 0.9287
Target:  5'- gCGGCGUCGGCgGCAaCAaCAGCcACg -3'
miRNA:   3'- gGUUGCGGCCGgCGUaGUgGUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 67532 0.66 0.9287
Target:  5'- aCCAgGCGCCaGCCGgCGUCGuuGACcACc -3'
miRNA:   3'- -GGU-UGCGGcCGGC-GUAGUggUUGaUG- -5'
29605 3' -54.8 NC_006151.1 + 73110 0.66 0.9287
Target:  5'- aCCu-CGCCGGCgGCG-CGCCcGCg-- -3'
miRNA:   3'- -GGuuGCGGCCGgCGUaGUGGuUGaug -5'
29605 3' -54.8 NC_006151.1 + 137492 0.66 0.9287
Target:  5'- aCGACGCC-GCC-C-UCGCCGACUuugGCg -3'
miRNA:   3'- gGUUGCGGcCGGcGuAGUGGUUGA---UG- -5'
29605 3' -54.8 NC_006151.1 + 95967 0.66 0.9287
Target:  5'- cCCGACGCC-GCCGCggCG-CAGCa-- -3'
miRNA:   3'- -GGUUGCGGcCGGCGuaGUgGUUGaug -5'
29605 3' -54.8 NC_006151.1 + 20212 0.66 0.9287
Target:  5'- gCAGCGCCgGGCCGCGcaGgCGACc-- -3'
miRNA:   3'- gGUUGCGG-CCGGCGUagUgGUUGaug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.