Results 21 - 40 of 279 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29605 | 3' | -54.8 | NC_006151.1 | + | 39009 | 0.66 | 0.938793 |
Target: 5'- nCGGCGCCccgcuccGCCGCcgCGCCGcCUGg -3' miRNA: 3'- gGUUGCGGc------CGGCGuaGUGGUuGAUg -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 125269 | 0.66 | 0.938793 |
Target: 5'- cCCGAgcCGCCGGCCGuCAacggCACgGGgcacCUGCg -3' miRNA: 3'- -GGUU--GCGGCCGGC-GUa---GUGgUU----GAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 113125 | 0.66 | 0.937341 |
Target: 5'- gCgGACGCCGccgggcccggcuacGCCGaCcUCGCCAuGCUGCu -3' miRNA: 3'- -GgUUGCGGC--------------CGGC-GuAGUGGU-UGAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 118333 | 0.66 | 0.933868 |
Target: 5'- gCAGCGCCGcGCCcGCccucUCGCgCGcCUGCg -3' miRNA: 3'- gGUUGCGGC-CGG-CGu---AGUG-GUuGAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 90094 | 0.66 | 0.933868 |
Target: 5'- cCCGccGCGCCgcaGGCCGCGgcgaCGCCcauGACgagGCa -3' miRNA: 3'- -GGU--UGCGG---CCGGCGUa---GUGG---UUGa--UG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 2957 | 0.66 | 0.933868 |
Target: 5'- aCGGCGCCGGCgaaGCcgaggucccgCGCCGAgaGCa -3' miRNA: 3'- gGUUGCGGCCGg--CGua--------GUGGUUgaUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 114136 | 0.66 | 0.933868 |
Target: 5'- gCCGcCGCCGaGCCGCGgcucgggcgCAgCGACcGCg -3' miRNA: 3'- -GGUuGCGGC-CGGCGUa--------GUgGUUGaUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 60911 | 0.66 | 0.930796 |
Target: 5'- uCC-ACGCgGGCCaGUcgCGCCAuggugggcgaguagaGCUGCc -3' miRNA: 3'- -GGuUGCGgCCGG-CGuaGUGGU---------------UGAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 57606 | 0.66 | 0.9287 |
Target: 5'- gCCGGCcUCGGCCGCGgcCGCCucGACgGCg -3' miRNA: 3'- -GGUUGcGGCCGGCGUa-GUGG--UUGaUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 68155 | 0.66 | 0.9287 |
Target: 5'- gUCGugGUcaCGGCCGC--CACCAGCgcguagGCg -3' miRNA: 3'- -GGUugCG--GCCGGCGuaGUGGUUGa-----UG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 74022 | 0.66 | 0.9287 |
Target: 5'- uCguGCGCuCGGCCauguuCGUCACCGucucCUGCa -3' miRNA: 3'- -GguUGCG-GCCGGc----GUAGUGGUu---GAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 114984 | 0.66 | 0.9287 |
Target: 5'- -uGACGCuCGGCaccuccccguggCGCAUgGCCAGCUu- -3' miRNA: 3'- ggUUGCG-GCCG------------GCGUAgUGGUUGAug -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 136760 | 0.66 | 0.9287 |
Target: 5'- gCCucGCcCCGGCCaugggCGCCGGCUACg -3' miRNA: 3'- -GGu-UGcGGCCGGcgua-GUGGUUGAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 45790 | 0.66 | 0.9287 |
Target: 5'- cCCcuCGCCaccGCCGCAgCGCCugucACUGCc -3' miRNA: 3'- -GGuuGCGGc--CGGCGUaGUGGu---UGAUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 48743 | 0.66 | 0.9287 |
Target: 5'- gCGGCGUCGGCgGCAaCAaCAGCcACg -3' miRNA: 3'- gGUUGCGGCCGgCGUaGUgGUUGaUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 67532 | 0.66 | 0.9287 |
Target: 5'- aCCAgGCGCCaGCCGgCGUCGuuGACcACc -3' miRNA: 3'- -GGU-UGCGGcCGGC-GUAGUggUUGaUG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 73110 | 0.66 | 0.9287 |
Target: 5'- aCCu-CGCCGGCgGCG-CGCCcGCg-- -3' miRNA: 3'- -GGuuGCGGCCGgCGUaGUGGuUGaug -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 137492 | 0.66 | 0.9287 |
Target: 5'- aCGACGCC-GCC-C-UCGCCGACUuugGCg -3' miRNA: 3'- gGUUGCGGcCGGcGuAGUGGUUGA---UG- -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 95967 | 0.66 | 0.9287 |
Target: 5'- cCCGACGCC-GCCGCggCG-CAGCa-- -3' miRNA: 3'- -GGUUGCGGcCGGCGuaGUgGUUGaug -5' |
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29605 | 3' | -54.8 | NC_006151.1 | + | 20212 | 0.66 | 0.9287 |
Target: 5'- gCAGCGCCgGGCCGCGcaGgCGACc-- -3' miRNA: 3'- gGUUGCGG-CCGGCGUagUgGUUGaug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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