miRNA display CGI


Results 1 - 20 of 676 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 5' -62.7 NC_006151.1 + 131119 0.91 0.014806
Target:  5'- gCCGCGGCgCGGGAgGCCGCGGCGCcGCg -3'
miRNA:   3'- -GGCGCUG-GUCCUgCGGCGCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 104147 0.88 0.025624
Target:  5'- aCCGCGGCUAcGACGCCGCGGaGCUGCg -3'
miRNA:   3'- -GGCGCUGGUcCUGCGGCGCCgCGACG- -5'
29605 5' -62.7 NC_006151.1 + 123031 0.88 0.026994
Target:  5'- gCCGUGGCguGGGCggaccugccgGCCGCGGCGCUGCg -3'
miRNA:   3'- -GGCGCUGguCCUG----------CGGCGCCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 3247 0.87 0.031468
Target:  5'- gCGCGGCggcggagCGGGGCGCCGCGGCGCgcgGCg -3'
miRNA:   3'- gGCGCUG-------GUCCUGCGGCGCCGCGa--CG- -5'
29605 5' -62.7 NC_006151.1 + 106631 0.87 0.032379
Target:  5'- gCCGCGgucaccgagcGCCuGGACGCCGCGGCGCacgUGCg -3'
miRNA:   3'- -GGCGC----------UGGuCCUGCGGCGCCGCG---ACG- -5'
29605 5' -62.7 NC_006151.1 + 103745 0.86 0.035917
Target:  5'- gCGCGGCagugcgAGGagcGCGCCGCGGCGCUGCg -3'
miRNA:   3'- gGCGCUGg-----UCC---UGCGGCGCCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 64479 0.85 0.041946
Target:  5'- gCCGCGGCgGGGACGcCCGCGGgCGCggGCg -3'
miRNA:   3'- -GGCGCUGgUCCUGC-GGCGCC-GCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 81998 0.84 0.050237
Target:  5'- aCgGCGGCCAGGGCgGCCGCGuGCGCcGCc -3'
miRNA:   3'- -GgCGCUGGUCCUG-CGGCGC-CGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 136346 0.83 0.060114
Target:  5'- cCCaGCGGCCuGGACcCCGCGGgGCUGCu -3'
miRNA:   3'- -GG-CGCUGGuCCUGcGGCGCCgCGACG- -5'
29605 5' -62.7 NC_006151.1 + 13182 0.82 0.066577
Target:  5'- gCCGCGGCCgucucGGGGC-CCGCGGCGCcGCc -3'
miRNA:   3'- -GGCGCUGG-----UCCUGcGGCGCCGCGaCG- -5'
29605 5' -62.7 NC_006151.1 + 4323 0.81 0.073707
Target:  5'- aCGCGGCCGGGcuGCGCgGCGGCGaagGCg -3'
miRNA:   3'- gGCGCUGGUCC--UGCGgCGCCGCga-CG- -5'
29605 5' -62.7 NC_006151.1 + 5332 0.81 0.083443
Target:  5'- gCCGCGGCCgcggcggAGGGCGCCcucuccggcGCGGCGCcgGCg -3'
miRNA:   3'- -GGCGCUGG-------UCCUGCGG---------CGCCGCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 100865 0.8 0.090223
Target:  5'- gCGCGACUGGGcCGCCGUgaaccuggaGGUGCUGCg -3'
miRNA:   3'- gGCGCUGGUCCuGCGGCG---------CCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 102489 0.8 0.097281
Target:  5'- uCgGCGugCuucauGGACGCCGCGGCGCgggaccccgGCg -3'
miRNA:   3'- -GgCGCugGu----CCUGCGGCGCCGCGa--------CG- -5'
29605 5' -62.7 NC_006151.1 + 131905 0.8 0.097281
Target:  5'- -gGCGACgGGGGCGgcagcagggccuCCGCGGUGCUGCc -3'
miRNA:   3'- ggCGCUGgUCCUGC------------GGCGCCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 105015 0.8 0.099747
Target:  5'- uCCGCGgaggaGCUGGuGACGCagGCGGCGCUGCu -3'
miRNA:   3'- -GGCGC-----UGGUC-CUGCGg-CGCCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 54403 0.79 0.102273
Target:  5'- gCGCGGCCucGGCGCCGaGGCGCUGg -3'
miRNA:   3'- gGCGCUGGucCUGCGGCgCCGCGACg -5'
29605 5' -62.7 NC_006151.1 + 61758 0.79 0.102273
Target:  5'- aCGCGGUCGcGGGgGCCGUGGUGCUGCg -3'
miRNA:   3'- gGCGCUGGU-CCUgCGGCGCCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 5033 0.79 0.102273
Target:  5'- gCCGgGGCCGGGGagGCCGCGGCGgaGg -3'
miRNA:   3'- -GGCgCUGGUCCUg-CGGCGCCGCgaCg -5'
29605 5' -62.7 NC_006151.1 + 69752 0.79 0.104858
Target:  5'- gCCGCGACCgccGGGgccacGCGCCGCGcGCGC-GCg -3'
miRNA:   3'- -GGCGCUGG---UCC-----UGCGGCGC-CGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.