Results 1 - 20 of 676 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29605 | 5' | -62.7 | NC_006151.1 | + | 660 | 0.76 | 0.175329 |
Target: 5'- gCGCGGCCGGGGCGggcuCCGCGGauCGCaucgGCg -3' miRNA: 3'- gGCGCUGGUCCUGC----GGCGCC--GCGa---CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 728 | 0.71 | 0.345737 |
Target: 5'- uCCGCGGgCGGGggcuuccGCuCCGCGGCGCccGCc -3' miRNA: 3'- -GGCGCUgGUCC-------UGcGGCGCCGCGa-CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 1836 | 0.66 | 0.618522 |
Target: 5'- gCCGCcgGGCCgAGGGgaccgaggccgcCGCCGCGGaCGCa-- -3' miRNA: 3'- -GGCG--CUGG-UCCU------------GCGGCGCC-GCGacg -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 2164 | 0.66 | 0.64763 |
Target: 5'- cCCGUccucGCCGGGGCcgGCCcCGGCGCccgagGCc -3' miRNA: 3'- -GGCGc---UGGUCCUG--CGGcGCCGCGa----CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 2201 | 0.69 | 0.449985 |
Target: 5'- cCCGCgGGCCGGugggucuccacGGCGCCcccggcgGCGGCGCggacGCu -3' miRNA: 3'- -GGCG-CUGGUC-----------CUGCGG-------CGCCGCGa---CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 2277 | 0.69 | 0.433673 |
Target: 5'- gCaCGGCCggcGGGGCGcCCGCGGCgGCgacgGCg -3' miRNA: 3'- gGcGCUGG---UCCUGC-GGCGCCG-CGa---CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 2332 | 0.74 | 0.240061 |
Target: 5'- -gGCGGCCucGGcgucgggcuccagcaGCGCCGCGGCGCagaagGCg -3' miRNA: 3'- ggCGCUGGu-CC---------------UGCGGCGCCGCGa----CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 2616 | 0.67 | 0.56072 |
Target: 5'- gCGgGACCGGGGuccgggGCC-CGGCGCgggUGCu -3' miRNA: 3'- gGCgCUGGUCCUg-----CGGcGCCGCG---ACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 3114 | 0.72 | 0.304478 |
Target: 5'- gCCGCGGCgCGGGucccAgGCCG-GGCGCgggGCg -3' miRNA: 3'- -GGCGCUG-GUCC----UgCGGCgCCGCGa--CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 3247 | 0.87 | 0.031468 |
Target: 5'- gCGCGGCggcggagCGGGGCGCCGCGGCGCgcgGCg -3' miRNA: 3'- gGCGCUG-------GUCCUGCGGCGCCGCGa--CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 3294 | 0.69 | 0.442216 |
Target: 5'- -gGCGGCCGGGucgaaggugaGCGCCG-GGCGCc-- -3' miRNA: 3'- ggCGCUGGUCC----------UGCGGCgCCGCGacg -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 3384 | 0.71 | 0.361359 |
Target: 5'- -gGCGGCgAGGGCcgccucggaggGCCGCGGCGUguggGUn -3' miRNA: 3'- ggCGCUGgUCCUG-----------CGGCGCCGCGa---CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 3423 | 0.74 | 0.221951 |
Target: 5'- cUCGcCGGCCGGGACGCgGCGGaaGCcGCc -3' miRNA: 3'- -GGC-GCUGGUCCUGCGgCGCCg-CGaCG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 3684 | 0.66 | 0.617552 |
Target: 5'- gCgGCGGgcCCcGGGCG-CGCGGCGCUucuucuuGCg -3' miRNA: 3'- -GgCGCU--GGuCCUGCgGCGCCGCGA-------CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 3855 | 0.66 | 0.628224 |
Target: 5'- gCCGgggaGGCCGGaGGgggcgcccgcCGCCGcCGGCGCcgGCg -3' miRNA: 3'- -GGCg---CUGGUC-CU----------GCGGC-GCCGCGa-CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 3955 | 0.7 | 0.416879 |
Target: 5'- uCCGCGGgcCCGGGccGCGCgGCGGC-CUcgGCg -3' miRNA: 3'- -GGCGCU--GGUCC--UGCGgCGCCGcGA--CG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 3993 | 0.74 | 0.242826 |
Target: 5'- gCCGCGGCCacguuggccGGGGCgaagaggGCCGCGGCGUa-- -3' miRNA: 3'- -GGCGCUGG---------UCCUG-------CGGCGCCGCGacg -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 4075 | 0.68 | 0.495358 |
Target: 5'- -aGCGcACCAGcGGCGCCaCGGUGCg-- -3' miRNA: 3'- ggCGC-UGGUC-CUGCGGcGCCGCGacg -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 4100 | 0.74 | 0.248435 |
Target: 5'- -gGCGACgAGGGCGacagaguCCGCGGC-CUGCc -3' miRNA: 3'- ggCGCUGgUCCUGC-------GGCGCCGcGACG- -5' |
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29605 | 5' | -62.7 | NC_006151.1 | + | 4132 | 0.68 | 0.526728 |
Target: 5'- gCCGCucGGCCGGGccggccccggggaucGCGUCGCGgaGCGCgaGCa -3' miRNA: 3'- -GGCG--CUGGUCC---------------UGCGGCGC--CGCGa-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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