miRNA display CGI


Results 1 - 20 of 676 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 5' -62.7 NC_006151.1 + 660 0.76 0.175329
Target:  5'- gCGCGGCCGGGGCGggcuCCGCGGauCGCaucgGCg -3'
miRNA:   3'- gGCGCUGGUCCUGC----GGCGCC--GCGa---CG- -5'
29605 5' -62.7 NC_006151.1 + 728 0.71 0.345737
Target:  5'- uCCGCGGgCGGGggcuuccGCuCCGCGGCGCccGCc -3'
miRNA:   3'- -GGCGCUgGUCC-------UGcGGCGCCGCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 1836 0.66 0.618522
Target:  5'- gCCGCcgGGCCgAGGGgaccgaggccgcCGCCGCGGaCGCa-- -3'
miRNA:   3'- -GGCG--CUGG-UCCU------------GCGGCGCC-GCGacg -5'
29605 5' -62.7 NC_006151.1 + 2164 0.66 0.64763
Target:  5'- cCCGUccucGCCGGGGCcgGCCcCGGCGCccgagGCc -3'
miRNA:   3'- -GGCGc---UGGUCCUG--CGGcGCCGCGa----CG- -5'
29605 5' -62.7 NC_006151.1 + 2201 0.69 0.449985
Target:  5'- cCCGCgGGCCGGugggucuccacGGCGCCcccggcgGCGGCGCggacGCu -3'
miRNA:   3'- -GGCG-CUGGUC-----------CUGCGG-------CGCCGCGa---CG- -5'
29605 5' -62.7 NC_006151.1 + 2277 0.69 0.433673
Target:  5'- gCaCGGCCggcGGGGCGcCCGCGGCgGCgacgGCg -3'
miRNA:   3'- gGcGCUGG---UCCUGC-GGCGCCG-CGa---CG- -5'
29605 5' -62.7 NC_006151.1 + 2332 0.74 0.240061
Target:  5'- -gGCGGCCucGGcgucgggcuccagcaGCGCCGCGGCGCagaagGCg -3'
miRNA:   3'- ggCGCUGGu-CC---------------UGCGGCGCCGCGa----CG- -5'
29605 5' -62.7 NC_006151.1 + 2616 0.67 0.56072
Target:  5'- gCGgGACCGGGGuccgggGCC-CGGCGCgggUGCu -3'
miRNA:   3'- gGCgCUGGUCCUg-----CGGcGCCGCG---ACG- -5'
29605 5' -62.7 NC_006151.1 + 3114 0.72 0.304478
Target:  5'- gCCGCGGCgCGGGucccAgGCCG-GGCGCgggGCg -3'
miRNA:   3'- -GGCGCUG-GUCC----UgCGGCgCCGCGa--CG- -5'
29605 5' -62.7 NC_006151.1 + 3247 0.87 0.031468
Target:  5'- gCGCGGCggcggagCGGGGCGCCGCGGCGCgcgGCg -3'
miRNA:   3'- gGCGCUG-------GUCCUGCGGCGCCGCGa--CG- -5'
29605 5' -62.7 NC_006151.1 + 3294 0.69 0.442216
Target:  5'- -gGCGGCCGGGucgaaggugaGCGCCG-GGCGCc-- -3'
miRNA:   3'- ggCGCUGGUCC----------UGCGGCgCCGCGacg -5'
29605 5' -62.7 NC_006151.1 + 3384 0.71 0.361359
Target:  5'- -gGCGGCgAGGGCcgccucggaggGCCGCGGCGUguggGUn -3'
miRNA:   3'- ggCGCUGgUCCUG-----------CGGCGCCGCGa---CG- -5'
29605 5' -62.7 NC_006151.1 + 3423 0.74 0.221951
Target:  5'- cUCGcCGGCCGGGACGCgGCGGaaGCcGCc -3'
miRNA:   3'- -GGC-GCUGGUCCUGCGgCGCCg-CGaCG- -5'
29605 5' -62.7 NC_006151.1 + 3684 0.66 0.617552
Target:  5'- gCgGCGGgcCCcGGGCG-CGCGGCGCUucuucuuGCg -3'
miRNA:   3'- -GgCGCU--GGuCCUGCgGCGCCGCGA-------CG- -5'
29605 5' -62.7 NC_006151.1 + 3855 0.66 0.628224
Target:  5'- gCCGgggaGGCCGGaGGgggcgcccgcCGCCGcCGGCGCcgGCg -3'
miRNA:   3'- -GGCg---CUGGUC-CU----------GCGGC-GCCGCGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 3955 0.7 0.416879
Target:  5'- uCCGCGGgcCCGGGccGCGCgGCGGC-CUcgGCg -3'
miRNA:   3'- -GGCGCU--GGUCC--UGCGgCGCCGcGA--CG- -5'
29605 5' -62.7 NC_006151.1 + 3993 0.74 0.242826
Target:  5'- gCCGCGGCCacguuggccGGGGCgaagaggGCCGCGGCGUa-- -3'
miRNA:   3'- -GGCGCUGG---------UCCUG-------CGGCGCCGCGacg -5'
29605 5' -62.7 NC_006151.1 + 4075 0.68 0.495358
Target:  5'- -aGCGcACCAGcGGCGCCaCGGUGCg-- -3'
miRNA:   3'- ggCGC-UGGUC-CUGCGGcGCCGCGacg -5'
29605 5' -62.7 NC_006151.1 + 4100 0.74 0.248435
Target:  5'- -gGCGACgAGGGCGacagaguCCGCGGC-CUGCc -3'
miRNA:   3'- ggCGCUGgUCCUGC-------GGCGCCGcGACG- -5'
29605 5' -62.7 NC_006151.1 + 4132 0.68 0.526728
Target:  5'- gCCGCucGGCCGGGccggccccggggaucGCGUCGCGgaGCGCgaGCa -3'
miRNA:   3'- -GGCG--CUGGUCC---------------UGCGGCGC--CGCGa-CG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.