miRNA display CGI


Results 21 - 40 of 676 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29605 5' -62.7 NC_006151.1 + 63171 0.66 0.64763
Target:  5'- aCGgGGCCuuGGGGCGCaCGgGGCcggGCUcGCc -3'
miRNA:   3'- gGCgCUGG--UCCUGCG-GCgCCG---CGA-CG- -5'
29605 5' -62.7 NC_006151.1 + 54438 0.66 0.64763
Target:  5'- uCgGCGACgAGGcgccCGCCGUGGC-CgaGCg -3'
miRNA:   3'- -GgCGCUGgUCCu---GCGGCGCCGcGa-CG- -5'
29605 5' -62.7 NC_006151.1 + 39052 0.66 0.64763
Target:  5'- -aGcCGACCccgAGGACGUgcgCGUGGUGgUGCu -3'
miRNA:   3'- ggC-GCUGG---UCCUGCG---GCGCCGCgACG- -5'
29605 5' -62.7 NC_006151.1 + 2164 0.66 0.64763
Target:  5'- cCCGUccucGCCGGGGCcgGCCcCGGCGCccgagGCc -3'
miRNA:   3'- -GGCGc---UGGUCCUG--CGGcGCCGCGa----CG- -5'
29605 5' -62.7 NC_006151.1 + 37880 0.66 0.64763
Target:  5'- cCCGCG-CCGGGgagGCGaCCGUcgaGGCccuCUGCg -3'
miRNA:   3'- -GGCGCuGGUCC---UGC-GGCG---CCGc--GACG- -5'
29605 5' -62.7 NC_006151.1 + 43682 0.66 0.64763
Target:  5'- -gGCGACgaGGGGC-CCGcCGGCGCg-- -3'
miRNA:   3'- ggCGCUGg-UCCUGcGGC-GCCGCGacg -5'
29605 5' -62.7 NC_006151.1 + 56093 0.66 0.64763
Target:  5'- cCUGCGACgAGuacCGCCGC--CGCUGCc -3'
miRNA:   3'- -GGCGCUGgUCcu-GCGGCGccGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 81890 0.66 0.64763
Target:  5'- gCCgGCG-CCgAGGcGCGCCggucGCGGCGCgccGCc -3'
miRNA:   3'- -GG-CGCuGG-UCC-UGCGG----CGCCGCGa--CG- -5'
29605 5' -62.7 NC_006151.1 + 85506 0.66 0.64763
Target:  5'- gCGCGccacggugaacACCAucacGGGCcugcugcuGCUGCGGCGcCUGCu -3'
miRNA:   3'- gGCGC-----------UGGU----CCUG--------CGGCGCCGC-GACG- -5'
29605 5' -62.7 NC_006151.1 + 94757 0.66 0.64763
Target:  5'- gCGCGGaaaCAGG-CGCCGCaGCGUc-- -3'
miRNA:   3'- gGCGCUg--GUCCuGCGGCGcCGCGacg -5'
29605 5' -62.7 NC_006151.1 + 121747 0.66 0.64763
Target:  5'- aCGUGuuucACUGGaGAUGCUGaaGCGCUGCg -3'
miRNA:   3'- gGCGC----UGGUC-CUGCGGCgcCGCGACG- -5'
29605 5' -62.7 NC_006151.1 + 138908 0.66 0.64763
Target:  5'- aCGCGGCgAGcGugcuCGCCGCcacGGUcaucgGCUGCa -3'
miRNA:   3'- gGCGCUGgUC-Cu---GCGGCG---CCG-----CGACG- -5'
29605 5' -62.7 NC_006151.1 + 87587 0.66 0.64666
Target:  5'- uCCGCcggcACCAucgacgccagcucGGcCGCCGUGGC-CUGCc -3'
miRNA:   3'- -GGCGc---UGGU-------------CCuGCGGCGCCGcGACG- -5'
29605 5' -62.7 NC_006151.1 + 132017 0.66 0.64569
Target:  5'- uCCGC-ACCuGGugcgagagguaGCCgGCGGCGCgcgGCa -3'
miRNA:   3'- -GGCGcUGGuCCug---------CGG-CGCCGCGa--CG- -5'
29605 5' -62.7 NC_006151.1 + 102118 0.66 0.64181
Target:  5'- gCGCGGgccggagccuguuccCCGGGcGCGCCG-GGCuGCUGg -3'
miRNA:   3'- gGCGCU---------------GGUCC-UGCGGCgCCG-CGACg -5'
29605 5' -62.7 NC_006151.1 + 85632 0.66 0.64181
Target:  5'- gCCGCGcggcgccaGCgGGGACGCgcccgccucgcgcaGCGGCGacgGCa -3'
miRNA:   3'- -GGCGC--------UGgUCCUGCGg-------------CGCCGCga-CG- -5'
29605 5' -62.7 NC_006151.1 + 85817 0.66 0.637929
Target:  5'- aCCaGCucaACCGGuGCGCCugGUGGCGCUGg -3'
miRNA:   3'- -GG-CGc--UGGUCcUGCGG--CGCCGCGACg -5'
29605 5' -62.7 NC_006151.1 + 65385 0.66 0.637929
Target:  5'- aCGUGccCCGGGcGCGCCGUGaGCGagcgGCg -3'
miRNA:   3'- gGCGCu-GGUCC-UGCGGCGC-CGCga--CG- -5'
29605 5' -62.7 NC_006151.1 + 129393 0.66 0.637929
Target:  5'- aCCaGCu-CUGGGugGCgCGCGGCGUauucgGCg -3'
miRNA:   3'- -GG-CGcuGGUCCugCG-GCGCCGCGa----CG- -5'
29605 5' -62.7 NC_006151.1 + 114903 0.66 0.637929
Target:  5'- gCGCGagGCCcGGGCGCaCGgcccCGGCGUcGCg -3'
miRNA:   3'- gGCGC--UGGuCCUGCG-GC----GCCGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.