miRNA display CGI


Results 1 - 20 of 248 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29606 3' -60 NC_006151.1 + 90363 0.66 0.734488
Target:  5'- --gGCGaCGCCgagcagcaucgUCGAcGCCGCGGGCGGg -3'
miRNA:   3'- aaaCGC-GCGG-----------GGCUcUGGUGCUCGCU- -5'
29606 3' -60 NC_006151.1 + 73694 0.66 0.734488
Target:  5'- --gGCGCgGCUCUGcgccgcgugcuGGGCCACGGGCu- -3'
miRNA:   3'- aaaCGCG-CGGGGC-----------UCUGGUGCUCGcu -5'
29606 3' -60 NC_006151.1 + 66801 0.66 0.734488
Target:  5'- --gGCgGgGCCCgGGGACgACGAcgGCGAc -3'
miRNA:   3'- aaaCG-CgCGGGgCUCUGgUGCU--CGCU- -5'
29606 3' -60 NC_006151.1 + 45562 0.66 0.734488
Target:  5'- --gGCGCGCCcgggccaucgucCCGGGACgGCccgaggGGGCGGg -3'
miRNA:   3'- aaaCGCGCGG------------GGCUCUGgUG------CUCGCU- -5'
29606 3' -60 NC_006151.1 + 17203 0.66 0.734488
Target:  5'- --gGcCGUGCCCCGGGcCCcCGAGUu- -3'
miRNA:   3'- aaaC-GCGCGGGGCUCuGGuGCUCGcu -5'
29606 3' -60 NC_006151.1 + 31592 0.66 0.733523
Target:  5'- --gGCGCGCUCCGcGcucccccGCCGCcuGGGCGGg -3'
miRNA:   3'- aaaCGCGCGGGGCuC-------UGGUG--CUCGCU- -5'
29606 3' -60 NC_006151.1 + 64713 0.66 0.728687
Target:  5'- --aGCGcCGCCauccucgccgcagaaCCG-GGCCACGAGCu- -3'
miRNA:   3'- aaaCGC-GCGG---------------GGCuCUGGUGCUCGcu -5'
29606 3' -60 NC_006151.1 + 10645 0.66 0.724803
Target:  5'- --gGCGCGgcauCCCCGcccAGGCgGCGGGgGAg -3'
miRNA:   3'- aaaCGCGC----GGGGC---UCUGgUGCUCgCU- -5'
29606 3' -60 NC_006151.1 + 98045 0.66 0.724803
Target:  5'- --aGCGCgagcaccaccaGCCCCGGGcgcucgGCCugGGGCu- -3'
miRNA:   3'- aaaCGCG-----------CGGGGCUC------UGGugCUCGcu -5'
29606 3' -60 NC_006151.1 + 29496 0.66 0.724803
Target:  5'- --cGCGCugGCCUCGAGccagcccuCCGCG-GCGAu -3'
miRNA:   3'- aaaCGCG--CGGGGCUCu-------GGUGCuCGCU- -5'
29606 3' -60 NC_006151.1 + 52166 0.66 0.724803
Target:  5'- --cGUGCGUCUCGAagGGCgCGCGcGCGAa -3'
miRNA:   3'- aaaCGCGCGGGGCU--CUG-GUGCuCGCU- -5'
29606 3' -60 NC_006151.1 + 86086 0.66 0.724803
Target:  5'- --cGCGCGCCgCCGccGCCAUGGGg-- -3'
miRNA:   3'- aaaCGCGCGG-GGCucUGGUGCUCgcu -5'
29606 3' -60 NC_006151.1 + 119612 0.66 0.724803
Target:  5'- -aUGgGCGUCuUCGGGACCAUGAacagcgccuacaGCGAc -3'
miRNA:   3'- aaACgCGCGG-GGCUCUGGUGCU------------CGCU- -5'
29606 3' -60 NC_006151.1 + 68881 0.66 0.72383
Target:  5'- --gGCGCGCCCgGccacgucgaGGACggccucgcggucgCGCGGGCGGa -3'
miRNA:   3'- aaaCGCGCGGGgC---------UCUG-------------GUGCUCGCU- -5'
29606 3' -60 NC_006151.1 + 129737 0.66 0.72383
Target:  5'- --cGCGgGCCCgCGAGGCgcugcagcaccagCGCGAagGCGAc -3'
miRNA:   3'- aaaCGCgCGGG-GCUCUG-------------GUGCU--CGCU- -5'
29606 3' -60 NC_006151.1 + 50436 0.66 0.71504
Target:  5'- -cUGCGCGCcggcggCCUGGGcaccgcCCGCGGGCGc -3'
miRNA:   3'- aaACGCGCG------GGGCUCu-----GGUGCUCGCu -5'
29606 3' -60 NC_006151.1 + 118319 0.66 0.71504
Target:  5'- -cUGCGUGcCCCCGAGcagcGCCGCGcccGCc- -3'
miRNA:   3'- aaACGCGC-GGGGCUC----UGGUGCu--CGcu -5'
29606 3' -60 NC_006151.1 + 120214 0.66 0.71504
Target:  5'- --aGCGCGgagcCCCCGGcgcgcGACCACGA-CGGg -3'
miRNA:   3'- aaaCGCGC----GGGGCU-----CUGGUGCUcGCU- -5'
29606 3' -60 NC_006151.1 + 140054 0.66 0.71504
Target:  5'- --cGCaCGCCaCCGAGGCgGCGcGCGu -3'
miRNA:   3'- aaaCGcGCGG-GGCUCUGgUGCuCGCu -5'
29606 3' -60 NC_006151.1 + 88328 0.66 0.71504
Target:  5'- ----aGCGCUgCGAGGCCACGcugucGCGGu -3'
miRNA:   3'- aaacgCGCGGgGCUCUGGUGCu----CGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.