miRNA display CGI


Results 1 - 17 of 17 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29606 5' -52.4 NC_006151.1 + 61853 0.66 0.962946
Target:  5'- cCGgGGacCCUGAUGCUC--GGCGCg- -3'
miRNA:   3'- -GCgUCaaGGACUACGAGuuCUGCGag -5'
29606 5' -52.4 NC_006151.1 + 99999 0.66 0.961877
Target:  5'- gCGCgAGgaCCUGAcggugGCgcacgcgcgcaacgUCGAGGCGCUCg -3'
miRNA:   3'- -GCG-UCaaGGACUa----CG--------------AGUUCUGCGAG- -5'
29606 5' -52.4 NC_006151.1 + 96265 0.67 0.951283
Target:  5'- uCGCAGcgCCc-GUGCUCGAGGCGggCc -3'
miRNA:   3'- -GCGUCaaGGacUACGAGUUCUGCgaG- -5'
29606 5' -52.4 NC_006151.1 + 86436 0.68 0.939372
Target:  5'- uCGCGGcgCCUGgcGCcCGgcgaggcccccgacgAGACGCUCu -3'
miRNA:   3'- -GCGUCaaGGACuaCGaGU---------------UCUGCGAG- -5'
29606 5' -52.4 NC_006151.1 + 140217 0.68 0.937887
Target:  5'- gGCGGUgcugcagaaccugcgCCUGAaGCUCGGGcCGUUCc -3'
miRNA:   3'- gCGUCAa--------------GGACUaCGAGUUCuGCGAG- -5'
29606 5' -52.4 NC_006151.1 + 95256 0.68 0.937387
Target:  5'- gGUAGUUCCcGAUGCgcaUCAuGGCGUUg -3'
miRNA:   3'- gCGUCAAGGaCUACG---AGUuCUGCGAg -5'
29606 5' -52.4 NC_006151.1 + 118947 0.68 0.932245
Target:  5'- aCGCGGcgCUguc-GCUgGAGGCGCUCg -3'
miRNA:   3'- -GCGUCaaGGacuaCGAgUUCUGCGAG- -5'
29606 5' -52.4 NC_006151.1 + 100668 0.69 0.895998
Target:  5'- gCGCGGcgUgCUGgcGCUCGucgcGACGCUCc -3'
miRNA:   3'- -GCGUCa-AgGACuaCGAGUu---CUGCGAG- -5'
29606 5' -52.4 NC_006151.1 + 133643 0.7 0.86685
Target:  5'- gGCGGUggUCCgGGUGCgaGAGGCGCUg -3'
miRNA:   3'- gCGUCA--AGGaCUACGagUUCUGCGAg -5'
29606 5' -52.4 NC_006151.1 + 54847 0.7 0.850887
Target:  5'- gCGCGGggagugCCUGGUGCUCuggcAGcCGCUg -3'
miRNA:   3'- -GCGUCaa----GGACUACGAGu---UCuGCGAg -5'
29606 5' -52.4 NC_006151.1 + 122061 0.7 0.834068
Target:  5'- uGCAGUUCCUccacgacgccgaGAaccUGCUCAAG-CaGCUCa -3'
miRNA:   3'- gCGUCAAGGA------------CU---ACGAGUUCuG-CGAG- -5'
29606 5' -52.4 NC_006151.1 + 28113 0.72 0.779144
Target:  5'- gCGCGGcUCCUcGucgGCUCGGGGCGCg- -3'
miRNA:   3'- -GCGUCaAGGA-Cua-CGAGUUCUGCGag -5'
29606 5' -52.4 NC_006151.1 + 130811 0.73 0.729387
Target:  5'- aCGCGGcgUCCgGGUcccGCUCGAGGCGCg- -3'
miRNA:   3'- -GCGUCa-AGGaCUA---CGAGUUCUGCGag -5'
29606 5' -52.4 NC_006151.1 + 100070 0.75 0.613699
Target:  5'- gCGCGGccgCCgaGGUGCUCGAGGCGC-Cg -3'
miRNA:   3'- -GCGUCaa-GGa-CUACGAGUUCUGCGaG- -5'
29606 5' -52.4 NC_006151.1 + 133429 0.75 0.60309
Target:  5'- aCGCGGgggUCUUGGcgGC-CGAGGCGCUCu -3'
miRNA:   3'- -GCGUCa--AGGACUa-CGaGUUCUGCGAG- -5'
29606 5' -52.4 NC_006151.1 + 72639 0.75 0.592504
Target:  5'- cCGCGG-UCCcGcgGCUC-AGGCGCUCg -3'
miRNA:   3'- -GCGUCaAGGaCuaCGAGuUCUGCGAG- -5'
29606 5' -52.4 NC_006151.1 + 137304 0.76 0.560965
Target:  5'- gCGCgGGUUCCgccgcgcGGUGCUCGAcGCGCUCg -3'
miRNA:   3'- -GCG-UCAAGGa------CUACGAGUUcUGCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.