miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29607 3' -52.1 NC_006151.1 + 80904 0.68 0.941926
Target:  5'- aUCAgggCCUUGACGUCGccGCCgugCAGCGu -3'
miRNA:   3'- aGGUa--GGAGUUGCAGU--UGGa--GUCGCu -5'
29607 3' -52.1 NC_006151.1 + 79767 0.66 0.977406
Target:  5'- gUCCccgGUCCaCGGCGgccggaucgCGGCCUCGGCGc -3'
miRNA:   3'- -AGG---UAGGaGUUGCa--------GUUGGAGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 78123 0.7 0.874669
Target:  5'- gCCAUCCUgCGGCGggccgCGggcGCCUCGGaCGAc -3'
miRNA:   3'- aGGUAGGA-GUUGCa----GU---UGGAGUC-GCU- -5'
29607 3' -52.1 NC_006151.1 + 71856 0.68 0.946086
Target:  5'- aCCGUCCUgcgccccCAGCGUCAGCagguucgggaUgAGCGAc -3'
miRNA:   3'- aGGUAGGA-------GUUGCAGUUGg---------AgUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 70661 0.67 0.958893
Target:  5'- cCCGUCCUCAcGCG-CG-CCgcCGGCGAg -3'
miRNA:   3'- aGGUAGGAGU-UGCaGUuGGa-GUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 70349 0.66 0.977406
Target:  5'- aCCAUCCUCGGCuUCAugaACCaggcCAGCu- -3'
miRNA:   3'- aGGUAGGAGUUGcAGU---UGGa---GUCGcu -5'
29607 3' -52.1 NC_006151.1 + 69032 0.66 0.985739
Target:  5'- aCCAgcUCCgcggUGGCGUCAaagACCggCAGCGGc -3'
miRNA:   3'- aGGU--AGGa---GUUGCAGU---UGGa-GUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 67828 0.66 0.98392
Target:  5'- gCCGUCgUCGucGCGggggcucagCAGCC-CGGCGAg -3'
miRNA:   3'- aGGUAGgAGU--UGCa--------GUUGGaGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 66001 0.66 0.979763
Target:  5'- -gCGUCCUCcgcGGCGUCGagcGCCUCcGCa- -3'
miRNA:   3'- agGUAGGAG---UUGCAGU---UGGAGuCGcu -5'
29607 3' -52.1 NC_006151.1 + 64830 0.73 0.741122
Target:  5'- cUCC-UCCUCGaggauguccccgGCGagGGCCUCGGCGGa -3'
miRNA:   3'- -AGGuAGGAGU------------UGCagUUGGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 63745 0.66 0.985739
Target:  5'- cUCCGgcgCgUCGGCGgggCGuCCUCGGCGc -3'
miRNA:   3'- -AGGUa--GgAGUUGCa--GUuGGAGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 62086 0.76 0.564128
Target:  5'- gUCGUCCUCGGCGcggUCGGCCUgGGCGc -3'
miRNA:   3'- aGGUAGGAGUUGC---AGUUGGAgUCGCu -5'
29607 3' -52.1 NC_006151.1 + 59431 0.67 0.972098
Target:  5'- gCCAg-CUCGGCGUCGGCCgccgccgCcGCGAc -3'
miRNA:   3'- aGGUagGAGUUGCAGUUGGa------GuCGCU- -5'
29607 3' -52.1 NC_006151.1 + 57576 0.68 0.954615
Target:  5'- gCCGUCCUUGACGUaggcgcacgugacCAggccgGCCUCGGCc- -3'
miRNA:   3'- aGGUAGGAGUUGCA-------------GU-----UGGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 57228 0.68 0.955016
Target:  5'- gCCGUCgCaggCGGCGcgcgCGGCCUCGGCGu -3'
miRNA:   3'- aGGUAG-Ga--GUUGCa---GUUGGAGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 55755 0.71 0.826024
Target:  5'- cUCCAUCCUgcGCGUgCGccACCUCGGCu- -3'
miRNA:   3'- -AGGUAGGAguUGCA-GU--UGGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 54238 0.68 0.950898
Target:  5'- --gAUCCUCAugGgCAACCUgGGCu- -3'
miRNA:   3'- aggUAGGAGUugCaGUUGGAgUCGcu -5'
29607 3' -52.1 NC_006151.1 + 50808 0.67 0.958893
Target:  5'- cCCcgCCagcgCAGCGUCcacGCCUCGGCc- -3'
miRNA:   3'- aGGuaGGa---GUUGCAGu--UGGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 50689 0.75 0.658575
Target:  5'- gCCG-CCgcggCAGCGUCcacGCCUCGGCGAc -3'
miRNA:   3'- aGGUaGGa---GUUGCAGu--UGGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 50617 0.71 0.84307
Target:  5'- gCCG-CCgcggCAGCGUgCAcGCCUCGGCGAc -3'
miRNA:   3'- aGGUaGGa---GUUGCA-GU-UGGAGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.