miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29607 3' -52.1 NC_006151.1 + 2164 0.68 0.937066
Target:  5'- cCCGUCCUCGcCGgggcCGGCCcCGGCGc -3'
miRNA:   3'- aGGUAGGAGUuGCa---GUUGGaGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 2324 0.69 0.931954
Target:  5'- aCCAgcggggcggCCUCGGCGUCGGgCUcCAGCa- -3'
miRNA:   3'- aGGUa--------GGAGUUGCAGUUgGA-GUCGcu -5'
29607 3' -52.1 NC_006151.1 + 3963 0.68 0.946536
Target:  5'- cCCGggCCgc-GCGgCGGCCUCGGCGAg -3'
miRNA:   3'- aGGUa-GGaguUGCaGUUGGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 6137 0.66 0.985031
Target:  5'- cUCCggCCgcggccgcgaggaCGGCGgccUCGGCCUCGGCGGc -3'
miRNA:   3'- -AGGuaGGa------------GUUGC---AGUUGGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 11854 0.68 0.950898
Target:  5'- cUCCuUCCUCucccCGUCGACUcgcgucgCGGCGAu -3'
miRNA:   3'- -AGGuAGGAGuu--GCAGUUGGa------GUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 17593 0.71 0.867099
Target:  5'- cCCGUCCaUCAGCGU-GACCaCGGUGAu -3'
miRNA:   3'- aGGUAGG-AGUUGCAgUUGGaGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 18368 0.67 0.96913
Target:  5'- cUCGUCCUCGGCGUCcAGgCUCAcGUa- -3'
miRNA:   3'- aGGUAGGAGUUGCAG-UUgGAGU-CGcu -5'
29607 3' -52.1 NC_006151.1 + 19765 0.67 0.972098
Target:  5'- gCCGUCgaggUCAuCGUCGccgGCCUCGGUGGa -3'
miRNA:   3'- aGGUAGg---AGUuGCAGU---UGGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 22229 0.74 0.700336
Target:  5'- aCCGUCgUCAGCGUCAGCUgccacgacUCGGUGu -3'
miRNA:   3'- aGGUAGgAGUUGCAGUUGG--------AGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 23132 0.66 0.985739
Target:  5'- cCCcUCCUC--CGUCGccgggcCCUCGGCGGg -3'
miRNA:   3'- aGGuAGGAGuuGCAGUu-----GGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 24424 0.66 0.977406
Target:  5'- cCCGcgCCccaGACGUCGACCUUGGUGu -3'
miRNA:   3'- aGGUa-GGag-UUGCAGUUGGAGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 26650 0.69 0.908974
Target:  5'- cCCGUCCUCcuCGUCcuccucguCCUCGGCc- -3'
miRNA:   3'- aGGUAGGAGuuGCAGuu------GGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 26875 0.67 0.971811
Target:  5'- gUCGUCCUCGucgACGUCGcacuCCUCcccaaagAGCGGg -3'
miRNA:   3'- aGGUAGGAGU---UGCAGUu---GGAG-------UCGCU- -5'
29607 3' -52.1 NC_006151.1 + 40396 0.67 0.958893
Target:  5'- cUCC-UCCUCuGCGUCcGCggCGGCGGc -3'
miRNA:   3'- -AGGuAGGAGuUGCAGuUGgaGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 50617 0.71 0.84307
Target:  5'- gCCG-CCgcggCAGCGUgCAcGCCUCGGCGAc -3'
miRNA:   3'- aGGUaGGa---GUUGCA-GU-UGGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 50689 0.75 0.658575
Target:  5'- gCCG-CCgcggCAGCGUCcacGCCUCGGCGAc -3'
miRNA:   3'- aGGUaGGa---GUUGCAGu--UGGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 50808 0.67 0.958893
Target:  5'- cCCcgCCagcgCAGCGUCcacGCCUCGGCc- -3'
miRNA:   3'- aGGuaGGa---GUUGCAGu--UGGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 54238 0.68 0.950898
Target:  5'- --gAUCCUCAugGgCAACCUgGGCu- -3'
miRNA:   3'- aggUAGGAGUugCaGUUGGAgUCGcu -5'
29607 3' -52.1 NC_006151.1 + 55755 0.71 0.826024
Target:  5'- cUCCAUCCUgcGCGUgCGccACCUCGGCu- -3'
miRNA:   3'- -AGGUAGGAguUGCA-GU--UGGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 57228 0.68 0.955016
Target:  5'- gCCGUCgCaggCGGCGcgcgCGGCCUCGGCGu -3'
miRNA:   3'- aGGUAG-Ga--GUUGCa---GUUGGAGUCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.