miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29607 3' -52.1 NC_006151.1 + 139849 0.67 0.96913
Target:  5'- aCCcgCgUCAACGagcUCuuuGCCUCGGCGc -3'
miRNA:   3'- aGGuaGgAGUUGC---AGu--UGGAGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 109310 0.67 0.962534
Target:  5'- gCCG-CCUCGGCGgcagCAGCggCGGCGGc -3'
miRNA:   3'- aGGUaGGAGUUGCa---GUUGgaGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 83985 0.67 0.96218
Target:  5'- -gCGUCCUUGACccuggccuuugaaGUCAACCUCGGgGu -3'
miRNA:   3'- agGUAGGAGUUG-------------CAGUUGGAGUCgCu -5'
29607 3' -52.1 NC_006151.1 + 70661 0.67 0.958893
Target:  5'- cCCGUCCUCAcGCG-CG-CCgcCGGCGAg -3'
miRNA:   3'- aGGUAGGAGU-UGCaGUuGGa-GUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 40396 0.67 0.958893
Target:  5'- cUCC-UCCUCuGCGUCcGCggCGGCGGc -3'
miRNA:   3'- -AGGuAGGAGuUGCAGuUGgaGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 50808 0.67 0.958893
Target:  5'- cCCcgCCagcgCAGCGUCcacGCCUCGGCc- -3'
miRNA:   3'- aGGuaGGa---GUUGCAGu--UGGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 57228 0.68 0.955016
Target:  5'- gCCGUCgCaggCGGCGcgcgCGGCCUCGGCGu -3'
miRNA:   3'- aGGUAG-Ga--GUUGCa---GUUGGAGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 57576 0.68 0.954615
Target:  5'- gCCGUCCUUGACGUaggcgcacgugacCAggccgGCCUCGGCc- -3'
miRNA:   3'- aGGUAGGAGUUGCA-------------GU-----UGGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 54238 0.68 0.950898
Target:  5'- --gAUCCUCAugGgCAACCUgGGCu- -3'
miRNA:   3'- aggUAGGAGUugCaGUUGGAgUCGcu -5'
29607 3' -52.1 NC_006151.1 + 11854 0.68 0.950898
Target:  5'- cUCCuUCCUCucccCGUCGACUcgcgucgCGGCGAu -3'
miRNA:   3'- -AGGuAGGAGuu--GCAGUUGGa------GUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 86286 0.68 0.950898
Target:  5'- cCCuucuUCCUCGGCGUCGucaacuGCCcgCAGCu- -3'
miRNA:   3'- aGGu---AGGAGUUGCAGU------UGGa-GUCGcu -5'
29607 3' -52.1 NC_006151.1 + 3963 0.68 0.946536
Target:  5'- cCCGggCCgc-GCGgCGGCCUCGGCGAg -3'
miRNA:   3'- aGGUa-GGaguUGCaGUUGGAGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 71856 0.68 0.946086
Target:  5'- aCCGUCCUgcgccccCAGCGUCAGCagguucgggaUgAGCGAc -3'
miRNA:   3'- aGGUAGGA-------GUUGCAGUUGg---------AgUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 80904 0.68 0.941926
Target:  5'- aUCAgggCCUUGACGUCGccGCCgugCAGCGu -3'
miRNA:   3'- aGGUa--GGAGUUGCAGU--UGGa--GUCGCu -5'
29607 3' -52.1 NC_006151.1 + 2164 0.68 0.937066
Target:  5'- cCCGUCCUCGcCGgggcCGGCCcCGGCGc -3'
miRNA:   3'- aGGUAGGAGUuGCa---GUUGGaGUCGCu -5'
29607 3' -52.1 NC_006151.1 + 2324 0.69 0.931954
Target:  5'- aCCAgcggggcggCCUCGGCGUCGGgCUcCAGCa- -3'
miRNA:   3'- aGGUa--------GGAGUUGCAGUUgGA-GUCGcu -5'
29607 3' -52.1 NC_006151.1 + 101796 0.69 0.926589
Target:  5'- cCCGUCCUCGcCGUCGcccccguccccGCCguccccgucUCGGCGGc -3'
miRNA:   3'- aGGUAGGAGUuGCAGU-----------UGG---------AGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 87554 0.69 0.92097
Target:  5'- gUCCAggCCUCggUcUCGGCCcCGGCGGa -3'
miRNA:   3'- -AGGUa-GGAGuuGcAGUUGGaGUCGCU- -5'
29607 3' -52.1 NC_006151.1 + 26650 0.69 0.908974
Target:  5'- cCCGUCCUCcuCGUCcuccucguCCUCGGCc- -3'
miRNA:   3'- aGGUAGGAGuuGCAGuu------GGAGUCGcu -5'
29607 3' -52.1 NC_006151.1 + 78123 0.7 0.874669
Target:  5'- gCCAUCCUgCGGCGggccgCGggcGCCUCGGaCGAc -3'
miRNA:   3'- aGGUAGGA-GUUGCa----GU---UGGAGUC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.