Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29607 | 5' | -58.5 | NC_006151.1 | + | 110018 | 0.68 | 0.665029 |
Target: 5'- ---aGCUGGACc-CCUGGGGcCUGGAg -3' miRNA: 3'- ucagCGACCUGcuGGACCUC-GACCUg -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 78652 | 0.68 | 0.68519 |
Target: 5'- ---aGCUGGuggagGCGGCCggggcgcgGGuGCUGGACg -3' miRNA: 3'- ucagCGACC-----UGCUGGa-------CCuCGACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 28088 | 0.68 | 0.69521 |
Target: 5'- cGUCGUccGGGCGuCCUcGAGCgGGGCg -3' miRNA: 3'- uCAGCGa-CCUGCuGGAcCUCGaCCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 141454 | 0.68 | 0.69521 |
Target: 5'- cGUaGgaGGGCGGUCUGGAGCcggGGGCg -3' miRNA: 3'- uCAgCgaCCUGCUGGACCUCGa--CCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 6290 | 0.68 | 0.69521 |
Target: 5'- cGGcCGCgGcGGCGGCCgccaGGAGCUGG-Cu -3' miRNA: 3'- -UCaGCGaC-CUGCUGGa---CCUCGACCuG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 103702 | 0.68 | 0.69521 |
Target: 5'- cGcCGCcgUGGAgcACCcGGAGCUGGGCu -3' miRNA: 3'- uCaGCG--ACCUgcUGGaCCUCGACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 137521 | 0.68 | 0.665029 |
Target: 5'- --gCGCcGGGCGACgaGGA-CUGGGCg -3' miRNA: 3'- ucaGCGaCCUGCUGgaCCUcGACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 99439 | 0.67 | 0.753928 |
Target: 5'- cGUCGC-GGAC-ACgCUGGAGCcccucuacggGGACg -3' miRNA: 3'- uCAGCGaCCUGcUG-GACCUCGa---------CCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 78325 | 0.67 | 0.744354 |
Target: 5'- ---gGCUGGACGAgcgcCCcGGGGC-GGGCg -3' miRNA: 3'- ucagCGACCUGCU----GGaCCUCGaCCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 113323 | 0.67 | 0.734682 |
Target: 5'- --aCGCUGGGgccCGugCUGGcGCUGGcGCu -3' miRNA: 3'- ucaGCGACCU---GCugGACCuCGACC-UG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 135118 | 0.67 | 0.734682 |
Target: 5'- uAG-CGCgcgGGGCGGgCUGG-GCggGGACg -3' miRNA: 3'- -UCaGCGa--CCUGCUgGACCuCGa-CCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 29432 | 0.67 | 0.715085 |
Target: 5'- uGGcCGCgggGGGCGGCggGGAGaggGGACg -3' miRNA: 3'- -UCaGCGa--CCUGCUGgaCCUCga-CCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 5469 | 0.67 | 0.724923 |
Target: 5'- cGGUgG-UGGugGAgUUGGAGUUGGAg -3' miRNA: 3'- -UCAgCgACCugCUgGACCUCGACCUg -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 3836 | 0.67 | 0.705178 |
Target: 5'- cGggGCUGGAgGGCCcGGAGCcGGGg -3' miRNA: 3'- uCagCGACCUgCUGGaCCUCGaCCUg -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 77572 | 0.67 | 0.715085 |
Target: 5'- -uUCG-UGGACGcCCUGGGGCUGcugcugccgcuGACg -3' miRNA: 3'- ucAGCgACCUGCuGGACCUCGAC-----------CUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 21476 | 0.67 | 0.715085 |
Target: 5'- cGUCGCcGGcucgggcagGCGGCCggGGGGCgcGGGCg -3' miRNA: 3'- uCAGCGaCC---------UGCUGGa-CCUCGa-CCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 61761 | 0.66 | 0.772751 |
Target: 5'- cGGUCGC-GGG-GGCCgUGGuGCUGcGGCg -3' miRNA: 3'- -UCAGCGaCCUgCUGG-ACCuCGAC-CUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 98442 | 0.66 | 0.763397 |
Target: 5'- -cUCGCcgagaaccUGGcCGGCCUGGcGCUGuGGCg -3' miRNA: 3'- ucAGCG--------ACCuGCUGGACCuCGAC-CUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 103067 | 0.66 | 0.763397 |
Target: 5'- cAGgCGCacGGGC-ACCUGGAGCggcgcgagcUGGACa -3' miRNA: 3'- -UCaGCGa-CCUGcUGGACCUCG---------ACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 30832 | 0.66 | 0.772751 |
Target: 5'- gAGUUGCgUGGGCGGagaGGAGCgaggaGGACu -3' miRNA: 3'- -UCAGCG-ACCUGCUggaCCUCGa----CCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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