miRNA display CGI


Results 41 - 47 of 47 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29607 5' -58.5 NC_006151.1 + 30832 0.66 0.772751
Target:  5'- gAGUUGCgUGGGCGGagaGGAGCgaggaGGACu -3'
miRNA:   3'- -UCAGCG-ACCUGCUggaCCUCGa----CCUG- -5'
29607 5' -58.5 NC_006151.1 + 92450 0.66 0.772751
Target:  5'- --gCGCUGccgcGACGuccucgcgaGCCUGGGGgUGGACu -3'
miRNA:   3'- ucaGCGAC----CUGC---------UGGACCUCgACCUG- -5'
29607 5' -58.5 NC_006151.1 + 49851 0.66 0.781982
Target:  5'- cGGgcccgCGCUGGGCGcagcACgUGGAGUUuGACa -3'
miRNA:   3'- -UCa----GCGACCUGC----UGgACCUCGAcCUG- -5'
29607 5' -58.5 NC_006151.1 + 138109 0.66 0.791081
Target:  5'- cGcCGCUGGcggacaugcugcGCGGCCUGGccgUGGACg -3'
miRNA:   3'- uCaGCGACC------------UGCUGGACCucgACCUG- -5'
29607 5' -58.5 NC_006151.1 + 84384 0.66 0.791081
Target:  5'- cGG-CGCgcggGGACGGgCggGGAGCgggUGGGCg -3'
miRNA:   3'- -UCaGCGa---CCUGCUgGa-CCUCG---ACCUG- -5'
29607 5' -58.5 NC_006151.1 + 103400 0.66 0.791081
Target:  5'- --cUGCUGGGCGACUUuGccacGCUGGGCc -3'
miRNA:   3'- ucaGCGACCUGCUGGAcCu---CGACCUG- -5'
29607 5' -58.5 NC_006151.1 + 85192 0.66 0.80358
Target:  5'- --cCGCUGGGCaucgcgGACCugcUGGAGCggguccccgaguaccUGGACg -3'
miRNA:   3'- ucaGCGACCUG------CUGG---ACCUCG---------------ACCUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.