Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29607 | 5' | -58.5 | NC_006151.1 | + | 30832 | 0.66 | 0.772751 |
Target: 5'- gAGUUGCgUGGGCGGagaGGAGCgaggaGGACu -3' miRNA: 3'- -UCAGCG-ACCUGCUggaCCUCGa----CCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 92450 | 0.66 | 0.772751 |
Target: 5'- --gCGCUGccgcGACGuccucgcgaGCCUGGGGgUGGACu -3' miRNA: 3'- ucaGCGAC----CUGC---------UGGACCUCgACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 49851 | 0.66 | 0.781982 |
Target: 5'- cGGgcccgCGCUGGGCGcagcACgUGGAGUUuGACa -3' miRNA: 3'- -UCa----GCGACCUGC----UGgACCUCGAcCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 138109 | 0.66 | 0.791081 |
Target: 5'- cGcCGCUGGcggacaugcugcGCGGCCUGGccgUGGACg -3' miRNA: 3'- uCaGCGACC------------UGCUGGACCucgACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 84384 | 0.66 | 0.791081 |
Target: 5'- cGG-CGCgcggGGACGGgCggGGAGCgggUGGGCg -3' miRNA: 3'- -UCaGCGa---CCUGCUgGa-CCUCG---ACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 103400 | 0.66 | 0.791081 |
Target: 5'- --cUGCUGGGCGACUUuGccacGCUGGGCc -3' miRNA: 3'- ucaGCGACCUGCUGGAcCu---CGACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 85192 | 0.66 | 0.80358 |
Target: 5'- --cCGCUGGGCaucgcgGACCugcUGGAGCggguccccgaguaccUGGACg -3' miRNA: 3'- ucaGCGACCUG------CUGG---ACCUCG---------------ACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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