Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29607 | 5' | -58.5 | NC_006151.1 | + | 77572 | 0.67 | 0.715085 |
Target: 5'- -uUCG-UGGACGcCCUGGGGCUGcugcugccgcuGACg -3' miRNA: 3'- ucAGCgACCUGCuGGACCUCGAC-----------CUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 21476 | 0.67 | 0.715085 |
Target: 5'- cGUCGCcGGcucgggcagGCGGCCggGGGGCgcGGGCg -3' miRNA: 3'- uCAGCGaCC---------UGCUGGa-CCUCGa-CCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 29432 | 0.67 | 0.715085 |
Target: 5'- uGGcCGCgggGGGCGGCggGGAGaggGGACg -3' miRNA: 3'- -UCaGCGa--CCUGCUGgaCCUCga-CCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 5469 | 0.67 | 0.724923 |
Target: 5'- cGGUgG-UGGugGAgUUGGAGUUGGAg -3' miRNA: 3'- -UCAgCgACCugCUgGACCUCGACCUg -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 135118 | 0.67 | 0.734682 |
Target: 5'- uAG-CGCgcgGGGCGGgCUGG-GCggGGACg -3' miRNA: 3'- -UCaGCGa--CCUGCUgGACCuCGa-CCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 113323 | 0.67 | 0.734682 |
Target: 5'- --aCGCUGGGgccCGugCUGGcGCUGGcGCu -3' miRNA: 3'- ucaGCGACCU---GCugGACCuCGACC-UG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 85192 | 0.66 | 0.80358 |
Target: 5'- --cCGCUGGGCaucgcgGACCugcUGGAGCggguccccgaguaccUGGACg -3' miRNA: 3'- ucaGCGACCUG------CUGG---ACCUCG---------------ACCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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