Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29607 | 5' | -58.5 | NC_006151.1 | + | 28088 | 0.68 | 0.69521 |
Target: 5'- cGUCGUccGGGCGuCCUcGAGCgGGGCg -3' miRNA: 3'- uCAGCGa-CCUGCuGGAcCUCGaCCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 141454 | 0.68 | 0.69521 |
Target: 5'- cGUaGgaGGGCGGUCUGGAGCcggGGGCg -3' miRNA: 3'- uCAgCgaCCUGCUGGACCUCGa--CCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 6290 | 0.68 | 0.69521 |
Target: 5'- cGGcCGCgGcGGCGGCCgccaGGAGCUGG-Cu -3' miRNA: 3'- -UCaGCGaC-CUGCUGGa---CCUCGACCuG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 103702 | 0.68 | 0.69521 |
Target: 5'- cGcCGCcgUGGAgcACCcGGAGCUGGGCu -3' miRNA: 3'- uCaGCG--ACCUgcUGGaCCUCGACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 78652 | 0.68 | 0.68519 |
Target: 5'- ---aGCUGGuggagGCGGCCggggcgcgGGuGCUGGACg -3' miRNA: 3'- ucagCGACC-----UGCUGGa-------CCuCGACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 137521 | 0.68 | 0.665029 |
Target: 5'- --gCGCcGGGCGACgaGGA-CUGGGCg -3' miRNA: 3'- ucaGCGaCCUGCUGgaCCUcGACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 110018 | 0.68 | 0.665029 |
Target: 5'- ---aGCUGGACc-CCUGGGGcCUGGAg -3' miRNA: 3'- ucagCGACCUGcuGGACCUC-GACCUg -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 121427 | 0.68 | 0.663006 |
Target: 5'- cGUCGCgGGGCucgcgccGGCCUcgcuggugcccgcGGAGCUGGGg -3' miRNA: 3'- uCAGCGaCCUG-------CUGGA-------------CCUCGACCUg -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 21381 | 0.68 | 0.654905 |
Target: 5'- --cCGCUGGgcacgACGGCCggcGGGGCgaagGGGCg -3' miRNA: 3'- ucaGCGACC-----UGCUGGa--CCUCGa---CCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 103876 | 0.69 | 0.634611 |
Target: 5'- gGGaCGCUGGuCGAggcgcgccaCCUGGcGCUGGAg -3' miRNA: 3'- -UCaGCGACCuGCU---------GGACCuCGACCUg -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 54694 | 0.69 | 0.634611 |
Target: 5'- cGUCGCcGGcaGCGugCUGGgccagGGCcUGGACg -3' miRNA: 3'- uCAGCGaCC--UGCugGACC-----UCG-ACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 110863 | 0.69 | 0.61431 |
Target: 5'- uAGUCGCUGGugGCGAacaUGG-GCUGGcGCu -3' miRNA: 3'- -UCAGCGACC--UGCUgg-ACCuCGACC-UG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 116977 | 0.69 | 0.594061 |
Target: 5'- cGUCGCUGGACG-UgaGGcGCUGGuGCc -3' miRNA: 3'- uCAGCGACCUGCuGgaCCuCGACC-UG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 105253 | 0.7 | 0.553945 |
Target: 5'- aGGUCGCcugGGACGagGCCUGGgAGgacuUUGGGCg -3' miRNA: 3'- -UCAGCGa--CCUGC--UGGACC-UC----GACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 102916 | 0.7 | 0.544033 |
Target: 5'- -cUCGCUGG-CGGCCgccgaGGAGCggcugcgcgcgcUGGACg -3' miRNA: 3'- ucAGCGACCuGCUGGa----CCUCG------------ACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 135759 | 0.7 | 0.524389 |
Target: 5'- cGUaCGCgugGGACGGCgCcGG-GCUGGACg -3' miRNA: 3'- uCA-GCGa--CCUGCUG-GaCCuCGACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 14264 | 0.7 | 0.524389 |
Target: 5'- cGGUCGg-GGugGGCCgGGAG-UGGGCg -3' miRNA: 3'- -UCAGCgaCCugCUGGaCCUCgACCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 86700 | 0.71 | 0.495454 |
Target: 5'- --cUGCUGcGCGACCgcugGGAGCUGGuCg -3' miRNA: 3'- ucaGCGACcUGCUGGa---CCUCGACCuG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 92571 | 0.71 | 0.485969 |
Target: 5'- gAGUCGCUGGAgGGCCgcgaGGuGGCccccgaGGACg -3' miRNA: 3'- -UCAGCGACCUgCUGGa---CC-UCGa-----CCUG- -5' |
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29607 | 5' | -58.5 | NC_006151.1 | + | 47225 | 0.71 | 0.467265 |
Target: 5'- gGGUCgGCUGGGCGGCucggCUGGuuGGCUGGcugGCg -3' miRNA: 3'- -UCAG-CGACCUGCUG----GACC--UCGACC---UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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