miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29608 3' -50.8 NC_006151.1 + 19357 0.67 0.983282
Target:  5'- gGCGUCGuGC-AGCGUGUAgaGGcCCGUGu -3'
miRNA:   3'- -CGUAGU-CGcUCGUAUAUaaCC-GGCGC- -5'
29608 3' -50.8 NC_006151.1 + 128798 0.67 0.983282
Target:  5'- cGCcUCGGCGAGCGc-----GGCgCGCGu -3'
miRNA:   3'- -CGuAGUCGCUCGUauauaaCCG-GCGC- -5'
29608 3' -50.8 NC_006151.1 + 64941 0.67 0.983282
Target:  5'- cGCGUCAGCGcc-------UGGCCGCGc -3'
miRNA:   3'- -CGUAGUCGCucguauauaACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 129013 0.67 0.983282
Target:  5'- uGCccuUCAGCGcGGCGUc----GGCCGCGc -3'
miRNA:   3'- -CGu--AGUCGC-UCGUAuauaaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 51274 0.67 0.981416
Target:  5'- gGCAUCA-CGAGCGcgcccucgggGGCCGCc -3'
miRNA:   3'- -CGUAGUcGCUCGUauauaa----CCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 81187 0.67 0.981199
Target:  5'- cGCcgC--CGAGCGUGUAcgccgGGCCGCa -3'
miRNA:   3'- -CGuaGucGCUCGUAUAUaa---CCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 4160 0.67 0.981199
Target:  5'- cGCGUCGcggagcGCGAGCAgcgc--GGCCGUc -3'
miRNA:   3'- -CGUAGU------CGCUCGUauauaaCCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 70620 0.67 0.981199
Target:  5'- uGCAggagauccUCGGCG-GCGccg--UGGCCGCGc -3'
miRNA:   3'- -CGU--------AGUCGCuCGUauauaACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 50622 0.67 0.97963
Target:  5'- cGCggCAGCGuGCAcgccucggcgacGGCCGCGg -3'
miRNA:   3'- -CGuaGUCGCuCGUauauaa------CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 128674 0.67 0.978929
Target:  5'- aGCAgcCAGCG-GUAcaacgUGGCCGCGu -3'
miRNA:   3'- -CGUa-GUCGCuCGUauauaACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 91083 0.67 0.978929
Target:  5'- gGCcgCgGGCGAGCGcgaagGUcgUcccGGCCGCGg -3'
miRNA:   3'- -CGuaG-UCGCUCGUa----UAuaA---CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 72295 0.67 0.978929
Target:  5'- gGCGUCA-CGcGCGUgAUGacGGCCGCGa -3'
miRNA:   3'- -CGUAGUcGCuCGUA-UAUaaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 101589 0.67 0.978929
Target:  5'- cGCcgcCAGCGAGCuccgGUgGGCCGgGg -3'
miRNA:   3'- -CGua-GUCGCUCGuauaUAaCCGGCgC- -5'
29608 3' -50.8 NC_006151.1 + 92136 0.67 0.978209
Target:  5'- cGCAUCGcGCGcGGCGccaaggccaucaUGGCCGCGg -3'
miRNA:   3'- -CGUAGU-CGC-UCGUauaua-------ACCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 69722 0.67 0.976461
Target:  5'- gGCAgCAGCGcGUcgAUGUggccccccgcGGCCGCGa -3'
miRNA:   3'- -CGUaGUCGCuCGuaUAUAa---------CCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 89543 0.67 0.976461
Target:  5'- ---gCAGCGccgaGGCcgGUGgaGGCCGCGa -3'
miRNA:   3'- cguaGUCGC----UCGuaUAUaaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 17056 0.67 0.976461
Target:  5'- gGCGUCGGCGucCGUcagcccgGGCCGCc -3'
miRNA:   3'- -CGUAGUCGCucGUAuauaa--CCGGCGc -5'
29608 3' -50.8 NC_006151.1 + 54091 0.67 0.976461
Target:  5'- gGCggCGGCG-GCGgccAUGUcGGCUGCGa -3'
miRNA:   3'- -CGuaGUCGCuCGUa--UAUAaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 61453 0.67 0.976461
Target:  5'- cGCGUCcGCcgcCAUGUGcgGGCCGCGc -3'
miRNA:   3'- -CGUAGuCGcucGUAUAUaaCCGGCGC- -5'
29608 3' -50.8 NC_006151.1 + 23906 0.67 0.975943
Target:  5'- gGCGUCGgucGCGGGCccgacg-GGCCGCc -3'
miRNA:   3'- -CGUAGU---CGCUCGuauauaaCCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.