miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 3' -54.7 NC_006151.1 + 14170 0.67 0.904645
Target:  5'- cGCUCGaggacgCC-CGGACGaCGACgGUGAc -3'
miRNA:   3'- uCGAGCa-----GGuGCCUGC-GCUGgUAUUu -5'
29609 3' -54.7 NC_006151.1 + 15039 0.67 0.904645
Target:  5'- uGCgCGUCCACGGcGCGCGggGCCc---- -3'
miRNA:   3'- uCGaGCAGGUGCC-UGCGC--UGGuauuu -5'
29609 3' -54.7 NC_006151.1 + 73713 0.67 0.904645
Target:  5'- uGCUgGgCCACGGGCugGCGcACCGUGGc -3'
miRNA:   3'- uCGAgCaGGUGCCUG--CGC-UGGUAUUu -5'
29609 3' -54.7 NC_006151.1 + 2823 0.67 0.904645
Target:  5'- cGGCcggGUCCagGCGGACGCGGaCGUAGAc -3'
miRNA:   3'- -UCGag-CAGG--UGCCUGCGCUgGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 119756 0.67 0.898169
Target:  5'- cGGCUC--UgGCGGACGUGGCCGg--- -3'
miRNA:   3'- -UCGAGcaGgUGCCUGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 53094 0.67 0.898169
Target:  5'- uGCUCGUCCgucaGCGGGa--GGCCGUAc- -3'
miRNA:   3'- uCGAGCAGG----UGCCUgcgCUGGUAUuu -5'
29609 3' -54.7 NC_006151.1 + 68956 0.67 0.896845
Target:  5'- cGGCUCGcggcgcacggacUCGCGGACGCcGGCCAg--- -3'
miRNA:   3'- -UCGAGCa-----------GGUGCCUGCG-CUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 13945 0.67 0.891453
Target:  5'- gGGCgggCGccCCGgGGACGCGccgGCCAUGGGg -3'
miRNA:   3'- -UCGa--GCa-GGUgCCUGCGC---UGGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 83064 0.67 0.891453
Target:  5'- cAGCUUGgCCACGaGCGCGuCCAUc-- -3'
miRNA:   3'- -UCGAGCaGGUGCcUGCGCuGGUAuuu -5'
29609 3' -54.7 NC_006151.1 + 115199 0.67 0.891453
Target:  5'- cAGCgCG-CCGCGGgcgcgcGCGCGAUCGUGGc -3'
miRNA:   3'- -UCGaGCaGGUGCC------UGCGCUGGUAUUu -5'
29609 3' -54.7 NC_006151.1 + 122375 0.67 0.891453
Target:  5'- gGGCUCGacgaggcgcgCCGCGGGCGCGcGCUg---- -3'
miRNA:   3'- -UCGAGCa---------GGUGCCUGCGC-UGGuauuu -5'
29609 3' -54.7 NC_006151.1 + 122780 0.67 0.891453
Target:  5'- uGCUCGUggGCGGcuGCGCGGCCu---- -3'
miRNA:   3'- uCGAGCAggUGCC--UGCGCUGGuauuu -5'
29609 3' -54.7 NC_006151.1 + 138231 0.67 0.891453
Target:  5'- gGGCgcgCGcacgaguaCGCGGGCGCGACCGc--- -3'
miRNA:   3'- -UCGa--GCag------GUGCCUGCGCUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 68230 0.67 0.884501
Target:  5'- aGGCgcagCGcCCGCGGGCGCGuCagGUAGAc -3'
miRNA:   3'- -UCGa---GCaGGUGCCUGCGCuGg-UAUUU- -5'
29609 3' -54.7 NC_006151.1 + 64487 0.67 0.877316
Target:  5'- gGGgaCGcCCGCGGGCGCGGgCGg--- -3'
miRNA:   3'- -UCgaGCaGGUGCCUGCGCUgGUauuu -5'
29609 3' -54.7 NC_006151.1 + 75123 0.67 0.877316
Target:  5'- cAGCUgGUCgGCGGccggcgGCGCGGCCc---- -3'
miRNA:   3'- -UCGAgCAGgUGCC------UGCGCUGGuauuu -5'
29609 3' -54.7 NC_006151.1 + 105145 0.67 0.877316
Target:  5'- cGCgCGUCgACGGcCGCGGgcCCAUGGAc -3'
miRNA:   3'- uCGaGCAGgUGCCuGCGCU--GGUAUUU- -5'
29609 3' -54.7 NC_006151.1 + 134336 0.68 0.86227
Target:  5'- gGGCaUCG-CCACGGACGUGcCCu---- -3'
miRNA:   3'- -UCG-AGCaGGUGCCUGCGCuGGuauuu -5'
29609 3' -54.7 NC_006151.1 + 85166 0.68 0.86227
Target:  5'- gGGC-CGgcgCCGCGGGCGCcGCCGc--- -3'
miRNA:   3'- -UCGaGCa--GGUGCCUGCGcUGGUauuu -5'
29609 3' -54.7 NC_006151.1 + 55077 0.68 0.861494
Target:  5'- gGGCUCGgCCGCGG-CGCGccucgugcgccucAUCGUGAAc -3'
miRNA:   3'- -UCGAGCaGGUGCCuGCGC-------------UGGUAUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.