Results 21 - 40 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 116971 | 0.66 | 0.631198 |
Target: 5'- cCUCCACGUcGCUggacgugaggcgcugGUGCCgCAGCaccacgcgcucccccGCGGGc -3' miRNA: 3'- uGAGGUGCA-CGA---------------CGCGG-GUCG---------------CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 136961 | 0.66 | 0.632184 |
Target: 5'- uGCgCCGCcUGCUggagcuggccgccGCGCCgGGCgGCGGGc -3' miRNA: 3'- -UGaGGUGcACGA-------------CGCGGgUCG-CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 39108 | 0.66 | 0.644018 |
Target: 5'- aGCUCUGCGccgagcccgccgaggGCgccccGCGCCCGGCcUGGGa -3' miRNA: 3'- -UGAGGUGCa--------------CGa----CGCGGGUCGcGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 132306 | 0.66 | 0.651902 |
Target: 5'- -gUCCGCGUGCagGCGCCaCGagagcucGCGCGc- -3' miRNA: 3'- ugAGGUGCACGa-CGCGG-GU-------CGCGCcc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 69555 | 0.66 | 0.652887 |
Target: 5'- cGCUcgCCACGUgGCUGCGCaCCGGgugcCGCGc- -3' miRNA: 3'- -UGA--GGUGCA-CGACGCG-GGUC----GCGCcc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 82867 | 0.66 | 0.652887 |
Target: 5'- uCUCCAU---CUG-GCCgCGGCGCGGGu -3' miRNA: 3'- uGAGGUGcacGACgCGG-GUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 89477 | 0.66 | 0.652887 |
Target: 5'- cGCgUCACGUGCgcggcgGCGagCCGguacGCGCGGGu -3' miRNA: 3'- -UGaGGUGCACGa-----CGCg-GGU----CGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 89989 | 0.66 | 0.652887 |
Target: 5'- -gUgCACGUGCcGCGCa-GGCuGCGGGc -3' miRNA: 3'- ugAgGUGCACGaCGCGggUCG-CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 112378 | 0.66 | 0.652887 |
Target: 5'- -gUCCACGUcGaaGuCGCgCAGCGCGGc -3' miRNA: 3'- ugAGGUGCA-CgaC-GCGgGUCGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 135454 | 0.66 | 0.652887 |
Target: 5'- gGCaggCCugGUaGgUGCGCgCCAgcguguccGCGCGGGc -3' miRNA: 3'- -UGa--GGugCA-CgACGCG-GGU--------CGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 136386 | 0.66 | 0.643032 |
Target: 5'- cGCUCuCGCGcuucUGCUgccugaGCGgCUAcGCGCGGGg -3' miRNA: 3'- -UGAG-GUGC----ACGA------CGCgGGU-CGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 106942 | 0.66 | 0.643032 |
Target: 5'- aGCUCCugGgGCgaGCGCCUgcuGGCGCu-- -3' miRNA: 3'- -UGAGGugCaCGa-CGCGGG---UCGCGccc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 31949 | 0.66 | 0.63317 |
Target: 5'- --cCCGCGUGaUGaCGCCgGGgaCGCGGGa -3' miRNA: 3'- ugaGGUGCACgAC-GCGGgUC--GCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 49193 | 0.66 | 0.63317 |
Target: 5'- uGCUgaaCACGacGCUGacCGUgCGGCGCGGGg -3' miRNA: 3'- -UGAg--GUGCa-CGAC--GCGgGUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 133152 | 0.66 | 0.63317 |
Target: 5'- gACUCgGCG-GCgGCG-CgGGCGUGGGc -3' miRNA: 3'- -UGAGgUGCaCGaCGCgGgUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 10508 | 0.66 | 0.63317 |
Target: 5'- cGCcgCCGCaG-GC-GCGucCCCGGCGCGGGc -3' miRNA: 3'- -UGa-GGUG-CaCGaCGC--GGGUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 78638 | 0.66 | 0.64106 |
Target: 5'- cGCcgaCGCGUGCgagcugguggagGCGgCCggGGCGCGGGu -3' miRNA: 3'- -UGag-GUGCACGa-----------CGCgGG--UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 75400 | 0.66 | 0.642047 |
Target: 5'- gGCgggUGCGUGCgcggGUccgggagGCCCGGCGUGGGc -3' miRNA: 3'- -UGag-GUGCACGa---CG-------CGGGUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 84268 | 0.66 | 0.643032 |
Target: 5'- uGCUCgACGUGacgcgccugccCUGCaCCCAGaCGCGcGGc -3' miRNA: 3'- -UGAGgUGCAC-----------GACGcGGGUC-GCGC-CC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 30620 | 0.66 | 0.643032 |
Target: 5'- -gUCgGCGUGC-GCGCUguGCGgGuGGg -3' miRNA: 3'- ugAGgUGCACGaCGCGGguCGCgC-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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