Results 121 - 140 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 73307 | 0.71 | 0.353882 |
Target: 5'- -gUCCGCGU-CcGCGUCCAGCauggGCGGGg -3' miRNA: 3'- ugAGGUGCAcGaCGCGGGUCG----CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 73096 | 0.71 | 0.37237 |
Target: 5'- cCUCCucgcCGUGCaccucgccggcggcGCGCCC-GCGCGGGu -3' miRNA: 3'- uGAGGu---GCACGa-------------CGCGGGuCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 117782 | 0.71 | 0.369243 |
Target: 5'- gGCUCCggGCGggGCgccaCGCCCGGCgggGCGGGg -3' miRNA: 3'- -UGAGG--UGCa-CGac--GCGGGUCG---CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 88860 | 0.71 | 0.369243 |
Target: 5'- cGCUcCCGCG-GgaGCuCCgGGCGCGGGg -3' miRNA: 3'- -UGA-GGUGCaCgaCGcGGgUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 134310 | 0.71 | 0.369243 |
Target: 5'- uAUUgCACGccGCUGCGCCUcGCGcCGGGc -3' miRNA: 3'- -UGAgGUGCa-CGACGCGGGuCGC-GCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 76635 | 0.71 | 0.361506 |
Target: 5'- cGCUCCAuCGUGUgGCGacgaCCGcGUGCGGGc -3' miRNA: 3'- -UGAGGU-GCACGaCGCg---GGU-CGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 64473 | 0.71 | 0.361506 |
Target: 5'- cGCgccgCCGCG-GCgggGaCGCCCgcgGGCGCGGGc -3' miRNA: 3'- -UGa---GGUGCaCGa--C-GCGGG---UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 94937 | 0.71 | 0.353882 |
Target: 5'- uGCUCCGCGaUGCgGaCGCgCAGCGCGu- -3' miRNA: 3'- -UGAGGUGC-ACGaC-GCGgGUCGCGCcc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 75271 | 0.72 | 0.283981 |
Target: 5'- gGCUCCugGcGCaGCGCcgCCAGCGUGGc -3' miRNA: 3'- -UGAGGugCaCGaCGCG--GGUCGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 131097 | 0.72 | 0.290452 |
Target: 5'- -gUCCACGUcgGCgggGgGCCCggccgcGGCGCGGGa -3' miRNA: 3'- ugAGGUGCA--CGa--CgCGGG------UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 33956 | 0.72 | 0.297037 |
Target: 5'- gGCUCgggGCGggacGCgGCGCCC-GCGCGGGg -3' miRNA: 3'- -UGAGg--UGCa---CGaCGCGGGuCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 89028 | 0.72 | 0.310555 |
Target: 5'- cGCUCCcggcacACGaUGCgcuUGCGCCCGuGCGCGGu -3' miRNA: 3'- -UGAGG------UGC-ACG---ACGCGGGU-CGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 117239 | 0.72 | 0.310555 |
Target: 5'- cGCgUCCACGUcgGC-GgGCCCgaGGCGCGGGc -3' miRNA: 3'- -UG-AGGUGCA--CGaCgCGGG--UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 121878 | 0.72 | 0.310555 |
Target: 5'- cGCUCacguGCGcGCUGCGCCUGgcgcucgcguacGCGCGGGc -3' miRNA: 3'- -UGAGg---UGCaCGACGCGGGU------------CGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 125572 | 0.72 | 0.317487 |
Target: 5'- aACUCCAUGcGC-GUGCCCggcgAGCGCGGc -3' miRNA: 3'- -UGAGGUGCaCGaCGCGGG----UCGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 96582 | 0.73 | 0.265254 |
Target: 5'- cGCcUCGCG-GCgcgagGCGCCgGGCGCGGGc -3' miRNA: 3'- -UGaGGUGCaCGa----CGCGGgUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 83637 | 0.73 | 0.265254 |
Target: 5'- gGCggCCugGUGCUGCGCCguGaCGaGGGc -3' miRNA: 3'- -UGa-GGugCACGACGCGGguC-GCgCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 21360 | 0.73 | 0.261631 |
Target: 5'- gGCUCCGCGgGCUGCGgCCAcccGCugggcacgacggccgGCGGGg -3' miRNA: 3'- -UGAGGUGCaCGACGCgGGU---CG---------------CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 75129 | 0.73 | 0.253334 |
Target: 5'- -gUCgGCGgccgGCggcGCgGCCCAGCGCGGGc -3' miRNA: 3'- ugAGgUGCa---CGa--CG-CGGGUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 72019 | 0.74 | 0.220206 |
Target: 5'- --aCCACGU-CgGCGCCCcGCGCGGGc -3' miRNA: 3'- ugaGGUGCAcGaCGCGGGuCGCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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