Results 61 - 80 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 56444 | 0.69 | 0.432498 |
Target: 5'- cGCUCgacgagacgCGCGUGCUGCcccacuaccccaucGCCCAGCGCc-- -3' miRNA: 3'- -UGAG---------GUGCACGACG--------------CGGGUCGCGccc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 104158 | 0.69 | 0.435089 |
Target: 5'- gACgCCGCGgaGCUGCGCCCcgccgccgAGCGCGc- -3' miRNA: 3'- -UGaGGUGCa-CGACGCGGG--------UCGCGCcc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 120096 | 0.69 | 0.452585 |
Target: 5'- gUUCCAgccgGUGCUGCGCCgCcGCGUGGu -3' miRNA: 3'- uGAGGUg---CACGACGCGG-GuCGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 2292 | 0.69 | 0.452585 |
Target: 5'- cGC-CCGCGgcgGCgacgGCGCCCGGggucagcaccaGCGGGg -3' miRNA: 3'- -UGaGGUGCa--CGa---CGCGGGUCg----------CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 128781 | 0.69 | 0.452585 |
Target: 5'- cGCUCCACG-GCcucgGuCGCCUcggcgAGCGCGGc -3' miRNA: 3'- -UGAGGUGCaCGa---C-GCGGG-----UCGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 85601 | 0.69 | 0.460582 |
Target: 5'- aGCUCgGCGcGCUcGUGCCCAacgcgccgccgccGCGCGGc -3' miRNA: 3'- -UGAGgUGCaCGA-CGCGGGU-------------CGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 58683 | 0.68 | 0.497919 |
Target: 5'- --aCCGCGccgUGCgcgccGCGCCaCAGCGcCGGGu -3' miRNA: 3'- ugaGGUGC---ACGa----CGCGG-GUCGC-GCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 18555 | 0.68 | 0.488683 |
Target: 5'- aACggCCGCGagGC--CGCCCGGCgGCGGGa -3' miRNA: 3'- -UGa-GGUGCa-CGacGCGGGUCG-CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 106660 | 0.68 | 0.488683 |
Target: 5'- gGCg-CACGUGCgcgaggccgcgGCGCUCGGCGCGccGGg -3' miRNA: 3'- -UGagGUGCACGa----------CGCGGGUCGCGC--CC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 121068 | 0.68 | 0.479528 |
Target: 5'- gGCUUCACGUGCU-CGCagacgggcggCGGCGcCGGGc -3' miRNA: 3'- -UGAGGUGCACGAcGCGg---------GUCGC-GCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 97841 | 0.68 | 0.479528 |
Target: 5'- --gUCACGUGC-GCGCgCAGCGCGu- -3' miRNA: 3'- ugaGGUGCACGaCGCGgGUCGCGCcc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 25110 | 0.68 | 0.479528 |
Target: 5'- --gCUGCGUGCgaGCGCUgGGCGUGGa -3' miRNA: 3'- ugaGGUGCACGa-CGCGGgUCGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 4375 | 0.68 | 0.497919 |
Target: 5'- cCUCgACG-GUcGCcucCCCGGCGCGGGg -3' miRNA: 3'- uGAGgUGCaCGaCGc--GGGUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 54814 | 0.68 | 0.506297 |
Target: 5'- ---gCGCGUGCUggcgcgcgacGCGCUCacgggcgAGCGCGGGg -3' miRNA: 3'- ugagGUGCACGA----------CGCGGG-------UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 102267 | 0.68 | 0.507232 |
Target: 5'- -aUCCugGgcgcGCUGCcggagcgcgGCCCGGC-CGGGg -3' miRNA: 3'- ugAGGugCa---CGACG---------CGGGUCGcGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 129597 | 0.68 | 0.507232 |
Target: 5'- aACUCCGCGagcggGCacgUGCGCaCCAGCG-GGu -3' miRNA: 3'- -UGAGGUGCa----CG---ACGCG-GGUCGCgCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 114124 | 0.68 | 0.516618 |
Target: 5'- uGCcCCACGUGCgccGcCGCCgAGCcGCGGc -3' miRNA: 3'- -UGaGGUGCACGa--C-GCGGgUCG-CGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 9466 | 0.68 | 0.516618 |
Target: 5'- cUUCCGCGUccGCUucggccccccGCgGCCgCGGCGUGGGa -3' miRNA: 3'- uGAGGUGCA--CGA----------CG-CGG-GUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 114308 | 0.68 | 0.526074 |
Target: 5'- cCUaCUACGUGCUGCGCgacgggggCCuGCGCGa- -3' miRNA: 3'- uGA-GGUGCACGACGCG--------GGuCGCGCcc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 58852 | 0.68 | 0.526074 |
Target: 5'- cCagCGCGUGgaGCucGCCCGGCGCGccGGg -3' miRNA: 3'- uGagGUGCACgaCG--CGGGUCGCGC--CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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