miRNA display CGI


Results 101 - 120 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 113408 0.67 0.536549
Target:  5'- uGCUCaCGCGcgcgcacuggcuggcGCUGCGCcgcuuCCGGCGCGGc -3'
miRNA:   3'- -UGAG-GUGCa--------------CGACGCG-----GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 61726 0.67 0.544213
Target:  5'- cACggCCAcCGUGCUGCuggcgcacGCCCuguacgcGGuCGCGGGg -3'
miRNA:   3'- -UGa-GGU-GCACGACG--------CGGG-------UC-GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 72659 0.67 0.545174
Target:  5'- cGCU-CGCGUGCUGgaagcaGCCCuucaGCGGGg -3'
miRNA:   3'- -UGAgGUGCACGACg-----CGGGucg-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 75400 0.66 0.642047
Target:  5'- gGCgggUGCGUGCgcggGUccgggagGCCCGGCGUGGGc -3'
miRNA:   3'- -UGag-GUGCACGa---CG-------CGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 84268 0.66 0.643032
Target:  5'- uGCUCgACGUGacgcgccugccCUGCaCCCAGaCGCGcGGc -3'
miRNA:   3'- -UGAGgUGCAC-----------GACGcGGGUC-GCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 78638 0.66 0.64106
Target:  5'- cGCcgaCGCGUGCgagcugguggagGCGgCCggGGCGCGGGu -3'
miRNA:   3'- -UGag-GUGCACGa-----------CGCgGG--UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 30620 0.66 0.643032
Target:  5'- -gUCgGCGUGC-GCGCUguGCGgGuGGg -3'
miRNA:   3'- ugAGgUGCACGaCGCGGguCGCgC-CC- -5'
29609 5' -62.1 NC_006151.1 + 69555 0.66 0.652887
Target:  5'- cGCUcgCCACGUgGCUGCGCaCCGGgugcCGCGc- -3'
miRNA:   3'- -UGA--GGUGCA-CGACGCG-GGUC----GCGCcc -5'
29609 5' -62.1 NC_006151.1 + 82867 0.66 0.652887
Target:  5'- uCUCCAU---CUG-GCCgCGGCGCGGGu -3'
miRNA:   3'- uGAGGUGcacGACgCGG-GUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 112378 0.66 0.652887
Target:  5'- -gUCCACGUcGaaGuCGCgCAGCGCGGc -3'
miRNA:   3'- ugAGGUGCA-CgaC-GCGgGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 98000 0.66 0.623307
Target:  5'- gGCguggCCGCGUagGCgGCGCcggCCAGgucCGCGGGg -3'
miRNA:   3'- -UGa---GGUGCA--CGaCGCG---GGUC---GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 20202 0.66 0.623307
Target:  5'- gAUUCCGCGcGCaGCGCCgGGcCGCGcaGGc -3'
miRNA:   3'- -UGAGGUGCaCGaCGCGGgUC-GCGC--CC- -5'
29609 5' -62.1 NC_006151.1 + 65811 0.66 0.623307
Target:  5'- gACgugCCGCGguggauggGCgGcCGCgCCAGCGCGGc -3'
miRNA:   3'- -UGa--GGUGCa-------CGaC-GCG-GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 57853 0.66 0.623307
Target:  5'- uGCUCCACGgcGCUggucgcGCGCCCcGC-CGGc -3'
miRNA:   3'- -UGAGGUGCa-CGA------CGCGGGuCGcGCCc -5'
29609 5' -62.1 NC_006151.1 + 131492 0.66 0.623307
Target:  5'- cCUgCAgGUGCaccagGaGCCCcGCGCGGGg -3'
miRNA:   3'- uGAgGUgCACGa----CgCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 91434 0.66 0.623307
Target:  5'- cGCUCCacacgaACGUGCUGaacugGUCCGGgGCcaGGGu -3'
miRNA:   3'- -UGAGG------UGCACGACg----CGGGUCgCG--CCC- -5'
29609 5' -62.1 NC_006151.1 + 23894 0.66 0.623307
Target:  5'- -gUUCACGgGCUGgGCgUCGGuCGCGGGc -3'
miRNA:   3'- ugAGGUGCaCGACgCG-GGUC-GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 132750 0.66 0.603607
Target:  5'- cGCUCCAUG----GCGCCCAGCagcgcCGGGc -3'
miRNA:   3'- -UGAGGUGCacgaCGCGGGUCGc----GCCC- -5'
29609 5' -62.1 NC_006151.1 + 137276 0.66 0.593783
Target:  5'- uGC-CCGCGggcacGCUcgagGCGgCCAuGCGCGGGu -3'
miRNA:   3'- -UGaGGUGCa----CGA----CGCgGGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 77217 0.66 0.593783
Target:  5'- cGCgccgCCGCGUGUgUGCGCCgggaGGCgccccccgGCGGGu -3'
miRNA:   3'- -UGa---GGUGCACG-ACGCGGg---UCG--------CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.