miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 100897 0.7 0.385055
Target:  5'- uGCgCCGCG-GCgcgcgcGCGCCCgacgacgcgAGCGCGGGc -3'
miRNA:   3'- -UGaGGUGCaCGa-----CGCGGG---------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 69095 0.7 0.388271
Target:  5'- aGCUCgGCGUGCcGcCGCaCCAGCucccgccgcgccuccGCGGGc -3'
miRNA:   3'- -UGAGgUGCACGaC-GCG-GGUCG---------------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 29588 0.7 0.393127
Target:  5'- --aUCGCGgcgGCUGCgGCCgCGGCGgCGGGg -3'
miRNA:   3'- ugaGGUGCa--CGACG-CGG-GUCGC-GCCC- -5'
29609 5' -62.1 NC_006151.1 + 99065 0.7 0.393127
Target:  5'- -gUgCGCGaGCUGCGCCCgggcaccguGGCGCGGc -3'
miRNA:   3'- ugAgGUGCaCGACGCGGG---------UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 39271 0.7 0.393127
Target:  5'- cGC-CCAggggGUGCUGCuGCUCucGGCGCGGGa -3'
miRNA:   3'- -UGaGGUg---CACGACG-CGGG--UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 89921 0.7 0.401308
Target:  5'- uCUCCACGcuguaGCcGCGCCCcagguccgcgGGCGCGGc -3'
miRNA:   3'- uGAGGUGCa----CGaCGCGGG----------UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 98133 0.7 0.409596
Target:  5'- aGC-CCACG-GUuagUGUGCCCGGCGCGa- -3'
miRNA:   3'- -UGaGGUGCaCG---ACGCGGGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 130366 0.7 0.409596
Target:  5'- gACggCCGCGcGCgccgcgGCGUCCAGCGCGa- -3'
miRNA:   3'- -UGa-GGUGCaCGa-----CGCGGGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 20906 0.7 0.417991
Target:  5'- aGCUCCACGcgcccGCUGUaguuGCUCGGCGaGGGc -3'
miRNA:   3'- -UGAGGUGCa----CGACG----CGGGUCGCgCCC- -5'
29609 5' -62.1 NC_006151.1 + 123829 0.7 0.417991
Target:  5'- uGCUCCACaccacGCUGCaGCU--GCGCGGGg -3'
miRNA:   3'- -UGAGGUGca---CGACG-CGGguCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 138702 0.69 0.426489
Target:  5'- cGCUgagCC-CGgcGCUGCGCgCCGcGCGCGGGu -3'
miRNA:   3'- -UGA---GGuGCa-CGACGCG-GGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 64627 0.69 0.426489
Target:  5'- cGCcggCCGCGggGCgcgGCGCCCcGCGCaGGa -3'
miRNA:   3'- -UGa--GGUGCa-CGa--CGCGGGuCGCGcCC- -5'
29609 5' -62.1 NC_006151.1 + 5334 0.69 0.426489
Target:  5'- cGCggCCGCG-GCggaggGCGCCCucuccGGCGCGGc -3'
miRNA:   3'- -UGa-GGUGCaCGa----CGCGGG-----UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 56444 0.69 0.432498
Target:  5'- cGCUCgacgagacgCGCGUGCUGCcccacuaccccaucGCCCAGCGCc-- -3'
miRNA:   3'- -UGAG---------GUGCACGACG--------------CGGGUCGCGccc -5'
29609 5' -62.1 NC_006151.1 + 104158 0.69 0.435089
Target:  5'- gACgCCGCGgaGCUGCGCCCcgccgccgAGCGCGc- -3'
miRNA:   3'- -UGaGGUGCa-CGACGCGGG--------UCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 4064 0.69 0.440297
Target:  5'- -gUCCACGcuguagcgcaccaGCgGCGCCaCGGUGCGGGc -3'
miRNA:   3'- ugAGGUGCa------------CGaCGCGG-GUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 50459 0.69 0.443788
Target:  5'- cGC-CCGCGggcGCU-CGCgCCAGCGCGGc -3'
miRNA:   3'- -UGaGGUGCa--CGAcGCG-GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 120096 0.69 0.452585
Target:  5'- gUUCCAgccgGUGCUGCGCCgCcGCGUGGu -3'
miRNA:   3'- uGAGGUg---CACGACGCGG-GuCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 2292 0.69 0.452585
Target:  5'- cGC-CCGCGgcgGCgacgGCGCCCGGggucagcaccaGCGGGg -3'
miRNA:   3'- -UGaGGUGCa--CGa---CGCGGGUCg----------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 98218 0.69 0.452585
Target:  5'- -gUgCGCG-GCgGCGCCCGcGCGCGGa -3'
miRNA:   3'- ugAgGUGCaCGaCGCGGGU-CGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.