miRNA display CGI


Results 81 - 100 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 129741 0.68 0.526074
Target:  5'- gGC-CCGCGaggcGCUGCaGCaCCAGCGCGa- -3'
miRNA:   3'- -UGaGGUGCa---CGACG-CG-GGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 114308 0.68 0.526074
Target:  5'- cCUaCUACGUGCUGCGCgacgggggCCuGCGCGa- -3'
miRNA:   3'- uGA-GGUGCACGACGCG--------GGuCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 58852 0.68 0.526074
Target:  5'- cCagCGCGUGgaGCucGCCCGGCGCGccGGg -3'
miRNA:   3'- uGagGUGCACgaCG--CGGGUCGCGC--CC- -5'
29609 5' -62.1 NC_006151.1 + 73704 0.67 0.535594
Target:  5'- uGCgCCGCGUGCUGgGCCacgggcuGGCGCa-- -3'
miRNA:   3'- -UGaGGUGCACGACgCGGg------UCGCGccc -5'
29609 5' -62.1 NC_006151.1 + 113408 0.67 0.536549
Target:  5'- uGCUCaCGCGcgcgcacuggcuggcGCUGCGCcgcuuCCGGCGCGGc -3'
miRNA:   3'- -UGAG-GUGCa--------------CGACGCG-----GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 61726 0.67 0.544213
Target:  5'- cACggCCAcCGUGCUGCuggcgcacGCCCuguacgcGGuCGCGGGg -3'
miRNA:   3'- -UGa-GGU-GCACGACG--------CGGG-------UC-GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 72659 0.67 0.545174
Target:  5'- cGCU-CGCGUGCUGgaagcaGCCCuucaGCGGGg -3'
miRNA:   3'- -UGAgGUGCACGACg-----CGGGucg-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 122455 0.67 0.545174
Target:  5'- gGCgUCCACGgcgGCggcggGCGCCgaGGC-CGGGg -3'
miRNA:   3'- -UG-AGGUGCa--CGa----CGCGGg-UCGcGCCC- -5'
29609 5' -62.1 NC_006151.1 + 3110 0.67 0.545174
Target:  5'- gGCcgCCGCG-GCgcggGUcccagGCCgGGCGCGGGg -3'
miRNA:   3'- -UGa-GGUGCaCGa---CG-----CGGgUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 60831 0.67 0.554808
Target:  5'- aGCUCCACGaGCUGCGCgUugauCGUGGc -3'
miRNA:   3'- -UGAGGUGCaCGACGCGgGuc--GCGCCc -5'
29609 5' -62.1 NC_006151.1 + 126151 0.67 0.554808
Target:  5'- gGCUgCugGUGCUGgccgGCCUGGuCGCGGc -3'
miRNA:   3'- -UGAgGugCACGACg---CGGGUC-GCGCCc -5'
29609 5' -62.1 NC_006151.1 + 114431 0.67 0.554808
Target:  5'- --aCCGCGUGCUGgacCGCCU-GCuCGGGg -3'
miRNA:   3'- ugaGGUGCACGAC---GCGGGuCGcGCCC- -5'
29609 5' -62.1 NC_006151.1 + 103271 0.67 0.562551
Target:  5'- gGCggCCACGUGCUGaGCCaggagacgcgcGCGCGGc -3'
miRNA:   3'- -UGa-GGUGCACGACgCGGgu---------CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 50007 0.67 0.562551
Target:  5'- uGCgcgCCGCGcGCgcggcccgcgcgGCGCCCccgGGCGCGGc -3'
miRNA:   3'- -UGa--GGUGCaCGa-----------CGCGGG---UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 80685 0.67 0.564491
Target:  5'- --gUCugG-GUUcGCgGCCCGGCGCGGGc -3'
miRNA:   3'- ugaGGugCaCGA-CG-CGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 11691 0.67 0.574219
Target:  5'- gACggggCCGCGggacgGC-GCGUgCGGCGCGGa -3'
miRNA:   3'- -UGa---GGUGCa----CGaCGCGgGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 2621 0.67 0.574219
Target:  5'- --aCCGgG-GUccgGgGCCCGGCGCGGGu -3'
miRNA:   3'- ugaGGUgCaCGa--CgCGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 131927 0.67 0.574219
Target:  5'- cCUCCGCgGUGCUGCcguagcugGCCacgggcgAGgGCGGGc -3'
miRNA:   3'- uGAGGUG-CACGACG--------CGGg------UCgCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 97268 0.67 0.574219
Target:  5'- gGC-CCACacggGCaGCGCCuCGGCgGCGGGc -3'
miRNA:   3'- -UGaGGUGca--CGaCGCGG-GUCG-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 78445 0.67 0.583007
Target:  5'- --aCCGCGUGCUGCGCgaggcgaccgucuUCGGCGaGGu -3'
miRNA:   3'- ugaGGUGCACGACGCG-------------GGUCGCgCCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.