miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 3110 0.67 0.545174
Target:  5'- gGCcgCCGCG-GCgcggGUcccagGCCgGGCGCGGGg -3'
miRNA:   3'- -UGa-GGUGCaCGa---CG-----CGGgUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 72659 0.67 0.545174
Target:  5'- cGCU-CGCGUGCUGgaagcaGCCCuucaGCGGGg -3'
miRNA:   3'- -UGAgGUGCACGACg-----CGGGucg-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 61726 0.67 0.544213
Target:  5'- cACggCCAcCGUGCUGCuggcgcacGCCCuguacgcGGuCGCGGGg -3'
miRNA:   3'- -UGa-GGU-GCACGACG--------CGGG-------UC-GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 113408 0.67 0.536549
Target:  5'- uGCUCaCGCGcgcgcacuggcuggcGCUGCGCcgcuuCCGGCGCGGc -3'
miRNA:   3'- -UGAG-GUGCa--------------CGACGCG-----GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 73704 0.67 0.535594
Target:  5'- uGCgCCGCGUGCUGgGCCacgggcuGGCGCa-- -3'
miRNA:   3'- -UGaGGUGCACGACgCGGg------UCGCGccc -5'
29609 5' -62.1 NC_006151.1 + 129741 0.68 0.526074
Target:  5'- gGC-CCGCGaggcGCUGCaGCaCCAGCGCGa- -3'
miRNA:   3'- -UGaGGUGCa---CGACG-CG-GGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 58852 0.68 0.526074
Target:  5'- cCagCGCGUGgaGCucGCCCGGCGCGccGGg -3'
miRNA:   3'- uGagGUGCACgaCG--CGGGUCGCGC--CC- -5'
29609 5' -62.1 NC_006151.1 + 114308 0.68 0.526074
Target:  5'- cCUaCUACGUGCUGCGCgacgggggCCuGCGCGa- -3'
miRNA:   3'- uGA-GGUGCACGACGCG--------GGuCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 9466 0.68 0.516618
Target:  5'- cUUCCGCGUccGCUucggccccccGCgGCCgCGGCGUGGGa -3'
miRNA:   3'- uGAGGUGCA--CGA----------CG-CGG-GUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 114124 0.68 0.516618
Target:  5'- uGCcCCACGUGCgccGcCGCCgAGCcGCGGc -3'
miRNA:   3'- -UGaGGUGCACGa--C-GCGGgUCG-CGCCc -5'
29609 5' -62.1 NC_006151.1 + 129597 0.68 0.507232
Target:  5'- aACUCCGCGagcggGCacgUGCGCaCCAGCG-GGu -3'
miRNA:   3'- -UGAGGUGCa----CG---ACGCG-GGUCGCgCCc -5'
29609 5' -62.1 NC_006151.1 + 102267 0.68 0.507232
Target:  5'- -aUCCugGgcgcGCUGCcggagcgcgGCCCGGC-CGGGg -3'
miRNA:   3'- ugAGGugCa---CGACG---------CGGGUCGcGCCC- -5'
29609 5' -62.1 NC_006151.1 + 54814 0.68 0.506297
Target:  5'- ---gCGCGUGCUggcgcgcgacGCGCUCacgggcgAGCGCGGGg -3'
miRNA:   3'- ugagGUGCACGA----------CGCGGG-------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 4375 0.68 0.497919
Target:  5'- cCUCgACG-GUcGCcucCCCGGCGCGGGg -3'
miRNA:   3'- uGAGgUGCaCGaCGc--GGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 58683 0.68 0.497919
Target:  5'- --aCCGCGccgUGCgcgccGCGCCaCAGCGcCGGGu -3'
miRNA:   3'- ugaGGUGC---ACGa----CGCGG-GUCGC-GCCC- -5'
29609 5' -62.1 NC_006151.1 + 18555 0.68 0.488683
Target:  5'- aACggCCGCGagGC--CGCCCGGCgGCGGGa -3'
miRNA:   3'- -UGa-GGUGCa-CGacGCGGGUCG-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 106660 0.68 0.488683
Target:  5'- gGCg-CACGUGCgcgaggccgcgGCGCUCGGCGCGccGGg -3'
miRNA:   3'- -UGagGUGCACGa----------CGCGGGUCGCGC--CC- -5'
29609 5' -62.1 NC_006151.1 + 97841 0.68 0.479528
Target:  5'- --gUCACGUGC-GCGCgCAGCGCGu- -3'
miRNA:   3'- ugaGGUGCACGaCGCGgGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 25110 0.68 0.479528
Target:  5'- --gCUGCGUGCgaGCGCUgGGCGUGGa -3'
miRNA:   3'- ugaGGUGCACGa-CGCGGgUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 10541 0.68 0.479528
Target:  5'- uCUCCACGccccguuccGCccgGCGCCCaauGGCGCGGc -3'
miRNA:   3'- uGAGGUGCa--------CGa--CGCGGG---UCGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.