miRNA display CGI


Results 81 - 100 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 10541 0.68 0.479528
Target:  5'- uCUCCACGccccguuccGCccgGCGCCCaauGGCGCGGc -3'
miRNA:   3'- uGAGGUGCa--------CGa--CGCGGG---UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 119959 0.68 0.479528
Target:  5'- uACUCgGgCGcGCUGUGCCCGGCGaCGa- -3'
miRNA:   3'- -UGAGgU-GCaCGACGCGGGUCGC-GCcc -5'
29609 5' -62.1 NC_006151.1 + 57269 0.69 0.470457
Target:  5'- cCUCgACGgccucGCgcagcaggGCGUCCAGCGCGGc -3'
miRNA:   3'- uGAGgUGCa----CGa-------CGCGGGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 134194 0.69 0.470457
Target:  5'- ---aCGCGaUGCUcGuCGCgCAGCGCGGGg -3'
miRNA:   3'- ugagGUGC-ACGA-C-GCGgGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 111042 0.69 0.470457
Target:  5'- -gUCCACGgGCaggGCGCCCucgagcgucuGCGCGGu -3'
miRNA:   3'- ugAGGUGCaCGa--CGCGGGu---------CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 52582 0.69 0.461475
Target:  5'- uACUCgGC--GCUGcCGCCCuGCGCGuGGa -3'
miRNA:   3'- -UGAGgUGcaCGAC-GCGGGuCGCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 85601 0.69 0.460582
Target:  5'- aGCUCgGCGcGCUcGUGCCCAacgcgccgccgccGCGCGGc -3'
miRNA:   3'- -UGAGgUGCaCGA-CGCGGGU-------------CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 120096 0.69 0.452585
Target:  5'- gUUCCAgccgGUGCUGCGCCgCcGCGUGGu -3'
miRNA:   3'- uGAGGUg---CACGACGCGG-GuCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 2292 0.69 0.452585
Target:  5'- cGC-CCGCGgcgGCgacgGCGCCCGGggucagcaccaGCGGGg -3'
miRNA:   3'- -UGaGGUGCa--CGa---CGCGGGUCg----------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 98218 0.69 0.452585
Target:  5'- -gUgCGCG-GCgGCGCCCGcGCGCGGa -3'
miRNA:   3'- ugAgGUGCaCGaCGCGGGU-CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 128781 0.69 0.452585
Target:  5'- cGCUCCACG-GCcucgGuCGCCUcggcgAGCGCGGc -3'
miRNA:   3'- -UGAGGUGCaCGa---C-GCGGG-----UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 50459 0.69 0.443788
Target:  5'- cGC-CCGCGggcGCU-CGCgCCAGCGCGGc -3'
miRNA:   3'- -UGaGGUGCa--CGAcGCG-GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 4064 0.69 0.440297
Target:  5'- -gUCCACGcuguagcgcaccaGCgGCGCCaCGGUGCGGGc -3'
miRNA:   3'- ugAGGUGCa------------CGaCGCGG-GUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 104158 0.69 0.435089
Target:  5'- gACgCCGCGgaGCUGCGCCCcgccgccgAGCGCGc- -3'
miRNA:   3'- -UGaGGUGCa-CGACGCGGG--------UCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 56444 0.69 0.432498
Target:  5'- cGCUCgacgagacgCGCGUGCUGCcccacuaccccaucGCCCAGCGCc-- -3'
miRNA:   3'- -UGAG---------GUGCACGACG--------------CGGGUCGCGccc -5'
29609 5' -62.1 NC_006151.1 + 5334 0.69 0.426489
Target:  5'- cGCggCCGCG-GCggaggGCGCCCucuccGGCGCGGc -3'
miRNA:   3'- -UGa-GGUGCaCGa----CGCGGG-----UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 64627 0.69 0.426489
Target:  5'- cGCcggCCGCGggGCgcgGCGCCCcGCGCaGGa -3'
miRNA:   3'- -UGa--GGUGCa-CGa--CGCGGGuCGCGcCC- -5'
29609 5' -62.1 NC_006151.1 + 138702 0.69 0.426489
Target:  5'- cGCUgagCC-CGgcGCUGCGCgCCGcGCGCGGGu -3'
miRNA:   3'- -UGA---GGuGCa-CGACGCG-GGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 123829 0.7 0.417991
Target:  5'- uGCUCCACaccacGCUGCaGCU--GCGCGGGg -3'
miRNA:   3'- -UGAGGUGca---CGACG-CGGguCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 20906 0.7 0.417991
Target:  5'- aGCUCCACGcgcccGCUGUaguuGCUCGGCGaGGGc -3'
miRNA:   3'- -UGAGGUGCa----CGACG----CGGGUCGCgCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.