miRNA display CGI


Results 101 - 120 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 130366 0.7 0.409596
Target:  5'- gACggCCGCGcGCgccgcgGCGUCCAGCGCGa- -3'
miRNA:   3'- -UGa-GGUGCaCGa-----CGCGGGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 98133 0.7 0.409596
Target:  5'- aGC-CCACG-GUuagUGUGCCCGGCGCGa- -3'
miRNA:   3'- -UGaGGUGCaCG---ACGCGGGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 89921 0.7 0.401308
Target:  5'- uCUCCACGcuguaGCcGCGCCCcagguccgcgGGCGCGGc -3'
miRNA:   3'- uGAGGUGCa----CGaCGCGGG----------UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 29588 0.7 0.393127
Target:  5'- --aUCGCGgcgGCUGCgGCCgCGGCGgCGGGg -3'
miRNA:   3'- ugaGGUGCa--CGACG-CGG-GUCGC-GCCC- -5'
29609 5' -62.1 NC_006151.1 + 99065 0.7 0.393127
Target:  5'- -gUgCGCGaGCUGCGCCCgggcaccguGGCGCGGc -3'
miRNA:   3'- ugAgGUGCaCGACGCGGG---------UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 39271 0.7 0.393127
Target:  5'- cGC-CCAggggGUGCUGCuGCUCucGGCGCGGGa -3'
miRNA:   3'- -UGaGGUg---CACGACG-CGGG--UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 69095 0.7 0.388271
Target:  5'- aGCUCgGCGUGCcGcCGCaCCAGCucccgccgcgccuccGCGGGc -3'
miRNA:   3'- -UGAGgUGCACGaC-GCG-GGUCG---------------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 10625 0.7 0.385055
Target:  5'- cGC-CCGCGUGCgcucGUG-CCGGCGCGGc -3'
miRNA:   3'- -UGaGGUGCACGa---CGCgGGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 100897 0.7 0.385055
Target:  5'- uGCgCCGCG-GCgcgcgcGCGCCCgacgacgcgAGCGCGGGc -3'
miRNA:   3'- -UGaGGUGCaCGa-----CGCGGG---------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 74556 0.7 0.385055
Target:  5'- cCUCCugGgGCUGguUGCCCAGCGggucccCGGGc -3'
miRNA:   3'- uGAGGugCaCGAC--GCGGGUCGC------GCCC- -5'
29609 5' -62.1 NC_006151.1 + 77081 0.7 0.385055
Target:  5'- gGCUcaCCACGUGCga-GCUgaAGCGCGGGc -3'
miRNA:   3'- -UGA--GGUGCACGacgCGGg-UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 82400 0.7 0.377093
Target:  5'- aGCUCCGCGcccgaggGCgGC-CCCgagaGGCGCGGGc -3'
miRNA:   3'- -UGAGGUGCa------CGaCGcGGG----UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 73096 0.71 0.37237
Target:  5'- cCUCCucgcCGUGCaccucgccggcggcGCGCCC-GCGCGGGu -3'
miRNA:   3'- uGAGGu---GCACGa-------------CGCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 134310 0.71 0.369243
Target:  5'- uAUUgCACGccGCUGCGCCUcGCGcCGGGc -3'
miRNA:   3'- -UGAgGUGCa-CGACGCGGGuCGC-GCCC- -5'
29609 5' -62.1 NC_006151.1 + 88860 0.71 0.369243
Target:  5'- cGCUcCCGCG-GgaGCuCCgGGCGCGGGg -3'
miRNA:   3'- -UGA-GGUGCaCgaCGcGGgUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 117782 0.71 0.369243
Target:  5'- gGCUCCggGCGggGCgccaCGCCCGGCgggGCGGGg -3'
miRNA:   3'- -UGAGG--UGCa-CGac--GCGGGUCG---CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 76635 0.71 0.361506
Target:  5'- cGCUCCAuCGUGUgGCGacgaCCGcGUGCGGGc -3'
miRNA:   3'- -UGAGGU-GCACGaCGCg---GGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 64473 0.71 0.361506
Target:  5'- cGCgccgCCGCG-GCgggGaCGCCCgcgGGCGCGGGc -3'
miRNA:   3'- -UGa---GGUGCaCGa--C-GCGGG---UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 94937 0.71 0.353882
Target:  5'- uGCUCCGCGaUGCgGaCGCgCAGCGCGu- -3'
miRNA:   3'- -UGAGGUGC-ACGaC-GCGgGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 73307 0.71 0.353882
Target:  5'- -gUCCGCGU-CcGCGUCCAGCauggGCGGGg -3'
miRNA:   3'- ugAGGUGCAcGaCGCGGGUCG----CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.