miRNA display CGI


Results 121 - 140 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 82613 0.71 0.346373
Target:  5'- gGC-CCGCGcGCggGCGCCgCggugGGCGCGGGa -3'
miRNA:   3'- -UGaGGUGCaCGa-CGCGG-G----UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 27268 0.71 0.346373
Target:  5'- uACUCgGgGUGCUcgacgacguaGCGCCCgcgcuuggggGGCGUGGGg -3'
miRNA:   3'- -UGAGgUgCACGA----------CGCGGG----------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 118734 0.71 0.331699
Target:  5'- cACggCUACGUGCUGgGCCCGGCGg--- -3'
miRNA:   3'- -UGa-GGUGCACGACgCGGGUCGCgccc -5'
29609 5' -62.1 NC_006151.1 + 71680 0.71 0.331699
Target:  5'- cACgggCCGCGUGCcgagcgUGuCGCCCAGcCGCGaGGc -3'
miRNA:   3'- -UGa--GGUGCACG------AC-GCGGGUC-GCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 80403 0.71 0.331699
Target:  5'- -aUCCACGUuagGCGCCCGGUgggaaauguguGCGGGg -3'
miRNA:   3'- ugAGGUGCAcgaCGCGGGUCG-----------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 5084 0.71 0.330977
Target:  5'- cGCggggCCGCGgcggGCgccgGCggagacgguggcgGCCCGGCGCGGGc -3'
miRNA:   3'- -UGa---GGUGCa---CGa---CG-------------CGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 133650 0.71 0.324535
Target:  5'- -gUCCGgGUGCgagagGCGCugCCGGCGCGGcGg -3'
miRNA:   3'- ugAGGUgCACGa----CGCG--GGUCGCGCC-C- -5'
29609 5' -62.1 NC_006151.1 + 97725 0.71 0.324535
Target:  5'- aGCcCCccgaggACGUGCaGCGCgCGGUGCGGGa -3'
miRNA:   3'- -UGaGG------UGCACGaCGCGgGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 125572 0.72 0.317487
Target:  5'- aACUCCAUGcGC-GUGCCCggcgAGCGCGGc -3'
miRNA:   3'- -UGAGGUGCaCGaCGCGGG----UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 121878 0.72 0.310555
Target:  5'- cGCUCacguGCGcGCUGCGCCUGgcgcucgcguacGCGCGGGc -3'
miRNA:   3'- -UGAGg---UGCaCGACGCGGGU------------CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 117239 0.72 0.310555
Target:  5'- cGCgUCCACGUcgGC-GgGCCCgaGGCGCGGGc -3'
miRNA:   3'- -UG-AGGUGCA--CGaCgCGGG--UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 89028 0.72 0.310555
Target:  5'- cGCUCCcggcacACGaUGCgcuUGCGCCCGuGCGCGGu -3'
miRNA:   3'- -UGAGG------UGC-ACG---ACGCGGGU-CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 33956 0.72 0.297037
Target:  5'- gGCUCgggGCGggacGCgGCGCCC-GCGCGGGg -3'
miRNA:   3'- -UGAGg--UGCa---CGaCGCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 131097 0.72 0.290452
Target:  5'- -gUCCACGUcgGCgggGgGCCCggccgcGGCGCGGGa -3'
miRNA:   3'- ugAGGUGCA--CGa--CgCGGG------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 75271 0.72 0.283981
Target:  5'- gGCUCCugGcGCaGCGCcgCCAGCGUGGc -3'
miRNA:   3'- -UGAGGugCaCGaCGCG--GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 96582 0.73 0.265254
Target:  5'- cGCcUCGCG-GCgcgagGCGCCgGGCGCGGGc -3'
miRNA:   3'- -UGaGGUGCaCGa----CGCGGgUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 83637 0.73 0.265254
Target:  5'- gGCggCCugGUGCUGCGCCguGaCGaGGGc -3'
miRNA:   3'- -UGa-GGugCACGACGCGGguC-GCgCCC- -5'
29609 5' -62.1 NC_006151.1 + 21360 0.73 0.261631
Target:  5'- gGCUCCGCGgGCUGCGgCCAcccGCugggcacgacggccgGCGGGg -3'
miRNA:   3'- -UGAGGUGCaCGACGCgGGU---CG---------------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 75129 0.73 0.253334
Target:  5'- -gUCgGCGgccgGCggcGCgGCCCAGCGCGGGc -3'
miRNA:   3'- ugAGgUGCa---CGa--CG-CGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 72019 0.74 0.220206
Target:  5'- --aCCACGU-CgGCGCCCcGCGCGGGc -3'
miRNA:   3'- ugaGGUGCAcGaCGCGGGuCGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.