Results 141 - 148 of 148 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 29609 | 5' | -62.1 | NC_006151.1 | + | 102678 | 0.75 | 0.210013 |
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Target: 5'- gACgCCGUGgacGCggggGCGCCCGGCGCGGGc -3' miRNA: 3'- -UGaGGUGCa--CGa---CGCGGGUCGCGCCC- -5' |
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| 29609 | 5' | -62.1 | NC_006151.1 | + | 4507 | 0.75 | 0.20507 |
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Target: 5'- cGCUcaCCGCGUGCggcaGgGCCCAGaGCGGGu -3' miRNA: 3'- -UGA--GGUGCACGa---CgCGGGUCgCGCCC- -5' |
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| 29609 | 5' | -62.1 | NC_006151.1 | + | 58487 | 0.75 | 0.200229 |
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Target: 5'- gGCgUCCACGUGgaUGaUGCCCGcGCGCGGGc -3' miRNA: 3'- -UG-AGGUGCACg-AC-GCGGGU-CGCGCCC- -5' |
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| 29609 | 5' | -62.1 | NC_006151.1 | + | 83343 | 0.75 | 0.186298 |
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Target: 5'- cGCgUCCACGUGCUccccgGCGCgC-GCGCGGGc -3' miRNA: 3'- -UG-AGGUGCACGA-----CGCGgGuCGCGCCC- -5' |
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| 29609 | 5' | -62.1 | NC_006151.1 | + | 62283 | 0.76 | 0.181848 |
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Target: 5'- cUUCUGCGUGCUcGUGgCCAGCGCGGc -3' miRNA: 3'- uGAGGUGCACGA-CGCgGGUCGCGCCc -5' |
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| 29609 | 5' | -62.1 | NC_006151.1 | + | 59528 | 0.76 | 0.177492 |
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Target: 5'- aGCgCCGCGUGa-GgGCCCAGCGCGcGGg -3' miRNA: 3'- -UGaGGUGCACgaCgCGGGUCGCGC-CC- -5' |
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| 29609 | 5' | -62.1 | NC_006151.1 | + | 102484 | 0.77 | 0.138811 |
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Target: 5'- aGCUCUcgGCGUGCUucaugGaCGCCgCGGCGCGGGa -3' miRNA: 3'- -UGAGG--UGCACGA-----C-GCGG-GUCGCGCCC- -5' |
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| 29609 | 5' | -62.1 | NC_006151.1 | + | 49044 | 0.78 | 0.119473 |
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Target: 5'- gGC-CCACGgGCUggccuucaGCGUCCGGCGCGGGg -3' miRNA: 3'- -UGaGGUGCaCGA--------CGCGGGUCGCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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