miRNA display CGI


Results 41 - 60 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 58487 0.75 0.200229
Target:  5'- gGCgUCCACGUGgaUGaUGCCCGcGCGCGGGc -3'
miRNA:   3'- -UG-AGGUGCACg-AC-GCGGGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 58683 0.68 0.497919
Target:  5'- --aCCGCGccgUGCgcgccGCGCCaCAGCGcCGGGu -3'
miRNA:   3'- ugaGGUGC---ACGa----CGCGG-GUCGC-GCCC- -5'
29609 5' -62.1 NC_006151.1 + 58852 0.68 0.526074
Target:  5'- cCagCGCGUGgaGCucGCCCGGCGCGccGGg -3'
miRNA:   3'- uGagGUGCACgaCG--CGGGUCGCGC--CC- -5'
29609 5' -62.1 NC_006151.1 + 59528 0.76 0.177492
Target:  5'- aGCgCCGCGUGa-GgGCCCAGCGCGcGGg -3'
miRNA:   3'- -UGaGGUGCACgaCgCGGGUCGCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 60831 0.67 0.554808
Target:  5'- aGCUCCACGaGCUGCGCgUugauCGUGGc -3'
miRNA:   3'- -UGAGGUGCaCGACGCGgGuc--GCGCCc -5'
29609 5' -62.1 NC_006151.1 + 60926 0.66 0.599675
Target:  5'- cGCgCCAUGgugggcgaguagaGCUGC-CCCAGCGUGGa -3'
miRNA:   3'- -UGaGGUGCa------------CGACGcGGGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 61726 0.67 0.544213
Target:  5'- cACggCCAcCGUGCUGCuggcgcacGCCCuguacgcGGuCGCGGGg -3'
miRNA:   3'- -UGa-GGU-GCACGACG--------CGGG-------UC-GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 62283 0.76 0.181848
Target:  5'- cUUCUGCGUGCUcGUGgCCAGCGCGGc -3'
miRNA:   3'- uGAGGUGCACGA-CGCgGGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 64473 0.71 0.361506
Target:  5'- cGCgccgCCGCG-GCgggGaCGCCCgcgGGCGCGGGc -3'
miRNA:   3'- -UGa---GGUGCaCGa--C-GCGGG---UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 64627 0.69 0.426489
Target:  5'- cGCcggCCGCGggGCgcgGCGCCCcGCGCaGGa -3'
miRNA:   3'- -UGa--GGUGCa-CGa--CGCGGGuCGCGcCC- -5'
29609 5' -62.1 NC_006151.1 + 64924 0.67 0.587901
Target:  5'- cCUCCACG-GCguacucgcgcgucaGCGCCUGGCcgcgcuGCGGGc -3'
miRNA:   3'- uGAGGUGCaCGa-------------CGCGGGUCG------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 65722 0.66 0.613451
Target:  5'- cCUCgCGCG-GCUGCGCgCGGCccaggagcCGGGa -3'
miRNA:   3'- uGAG-GUGCaCGACGCGgGUCGc-------GCCC- -5'
29609 5' -62.1 NC_006151.1 + 65811 0.66 0.623307
Target:  5'- gACgugCCGCGguggauggGCgGcCGCgCCAGCGCGGc -3'
miRNA:   3'- -UGa--GGUGCa-------CGaC-GCG-GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 69095 0.7 0.388271
Target:  5'- aGCUCgGCGUGCcGcCGCaCCAGCucccgccgcgccuccGCGGGc -3'
miRNA:   3'- -UGAGgUGCACGaC-GCG-GGUCG---------------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 69555 0.66 0.652887
Target:  5'- cGCUcgCCACGUgGCUGCGCaCCGGgugcCGCGc- -3'
miRNA:   3'- -UGA--GGUGCA-CGACGCG-GGUC----GCGCcc -5'
29609 5' -62.1 NC_006151.1 + 71680 0.71 0.331699
Target:  5'- cACgggCCGCGUGCcgagcgUGuCGCCCAGcCGCGaGGc -3'
miRNA:   3'- -UGa--GGUGCACG------AC-GCGGGUC-GCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 72019 0.74 0.220206
Target:  5'- --aCCACGU-CgGCGCCCcGCGCGGGc -3'
miRNA:   3'- ugaGGUGCAcGaCGCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 72659 0.67 0.545174
Target:  5'- cGCU-CGCGUGCUGgaagcaGCCCuucaGCGGGg -3'
miRNA:   3'- -UGAgGUGCACGACg-----CGGGucg-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 73096 0.71 0.37237
Target:  5'- cCUCCucgcCGUGCaccucgccggcggcGCGCCC-GCGCGGGu -3'
miRNA:   3'- uGAGGu---GCACGa-------------CGCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 73307 0.71 0.353882
Target:  5'- -gUCCGCGU-CcGCGUCCAGCauggGCGGGg -3'
miRNA:   3'- ugAGGUGCAcGaCGCGGGUCG----CGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.