Results 61 - 80 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 73704 | 0.67 | 0.535594 |
Target: 5'- uGCgCCGCGUGCUGgGCCacgggcuGGCGCa-- -3' miRNA: 3'- -UGaGGUGCACGACgCGGg------UCGCGccc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 74556 | 0.7 | 0.385055 |
Target: 5'- cCUCCugGgGCUGguUGCCCAGCGggucccCGGGc -3' miRNA: 3'- uGAGGugCaCGAC--GCGGGUCGC------GCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 75129 | 0.73 | 0.253334 |
Target: 5'- -gUCgGCGgccgGCggcGCgGCCCAGCGCGGGc -3' miRNA: 3'- ugAGgUGCa---CGa--CG-CGGGUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 75271 | 0.72 | 0.283981 |
Target: 5'- gGCUCCugGcGCaGCGCcgCCAGCGUGGc -3' miRNA: 3'- -UGAGGugCaCGaCGCG--GGUCGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 75400 | 0.66 | 0.642047 |
Target: 5'- gGCgggUGCGUGCgcggGUccgggagGCCCGGCGUGGGc -3' miRNA: 3'- -UGag-GUGCACGa---CG-------CGGGUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 76635 | 0.71 | 0.361506 |
Target: 5'- cGCUCCAuCGUGUgGCGacgaCCGcGUGCGGGc -3' miRNA: 3'- -UGAGGU-GCACGaCGCg---GGU-CGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 77081 | 0.7 | 0.385055 |
Target: 5'- gGCUcaCCACGUGCga-GCUgaAGCGCGGGc -3' miRNA: 3'- -UGA--GGUGCACGacgCGGg-UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 77217 | 0.66 | 0.593783 |
Target: 5'- cGCgccgCCGCGUGUgUGCGCCgggaGGCgccccccgGCGGGu -3' miRNA: 3'- -UGa---GGUGCACG-ACGCGGg---UCG--------CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 78219 | 0.66 | 0.603607 |
Target: 5'- gGCUCCACGUcGCUcacggGCGCgCAGCGg--- -3' miRNA: 3'- -UGAGGUGCA-CGA-----CGCGgGUCGCgccc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 78316 | 0.66 | 0.602624 |
Target: 5'- uGCUCgACaG-GCUggacgaGCGCCCcggggcgGGCGCGGGc -3' miRNA: 3'- -UGAGgUG-CaCGA------CGCGGG-------UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 78445 | 0.67 | 0.583007 |
Target: 5'- --aCCGCGUGCUGCGCgaggcgaccgucuUCGGCGaGGu -3' miRNA: 3'- ugaGGUGCACGACGCG-------------GGUCGCgCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 78638 | 0.66 | 0.64106 |
Target: 5'- cGCcgaCGCGUGCgagcugguggagGCGgCCggGGCGCGGGu -3' miRNA: 3'- -UGag-GUGCACGa-----------CGCgGG--UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 80403 | 0.71 | 0.331699 |
Target: 5'- -aUCCACGUuagGCGCCCGGUgggaaauguguGCGGGg -3' miRNA: 3'- ugAGGUGCAcgaCGCGGGUCG-----------CGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 80685 | 0.67 | 0.564491 |
Target: 5'- --gUCugG-GUUcGCgGCCCGGCGCGGGc -3' miRNA: 3'- ugaGGugCaCGA-CG-CGGGUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 82400 | 0.7 | 0.377093 |
Target: 5'- aGCUCCGCGcccgaggGCgGC-CCCgagaGGCGCGGGc -3' miRNA: 3'- -UGAGGUGCa------CGaCGcGGG----UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 82613 | 0.71 | 0.346373 |
Target: 5'- gGC-CCGCGcGCggGCGCCgCggugGGCGCGGGa -3' miRNA: 3'- -UGaGGUGCaCGa-CGCGG-G----UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 82867 | 0.66 | 0.652887 |
Target: 5'- uCUCCAU---CUG-GCCgCGGCGCGGGu -3' miRNA: 3'- uGAGGUGcacGACgCGG-GUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 83343 | 0.75 | 0.186298 |
Target: 5'- cGCgUCCACGUGCUccccgGCGCgC-GCGCGGGc -3' miRNA: 3'- -UG-AGGUGCACGA-----CGCGgGuCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 83637 | 0.73 | 0.265254 |
Target: 5'- gGCggCCugGUGCUGCGCCguGaCGaGGGc -3' miRNA: 3'- -UGa-GGugCACGACGCGGguC-GCgCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 84268 | 0.66 | 0.643032 |
Target: 5'- uGCUCgACGUGacgcgccugccCUGCaCCCAGaCGCGcGGc -3' miRNA: 3'- -UGAGgUGCAC-----------GACGcGGGUC-GCGC-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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