miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 85148 0.66 0.603607
Target:  5'- uGCaCCGCGUGCggcagGgGgCCGGCgccGCGGGc -3'
miRNA:   3'- -UGaGGUGCACGa----CgCgGGUCG---CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 85601 0.69 0.460582
Target:  5'- aGCUCgGCGcGCUcGUGCCCAacgcgccgccgccGCGCGGc -3'
miRNA:   3'- -UGAGgUGCaCGA-CGCGGGU-------------CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 87180 0.66 0.602624
Target:  5'- cGC-CCGCGgcgccgccgcagcUGCUGcCGCCCGGggccguCGUGGGa -3'
miRNA:   3'- -UGaGGUGC-------------ACGAC-GCGGGUC------GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 88860 0.71 0.369243
Target:  5'- cGCUcCCGCG-GgaGCuCCgGGCGCGGGg -3'
miRNA:   3'- -UGA-GGUGCaCgaCGcGGgUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 89028 0.72 0.310555
Target:  5'- cGCUCCcggcacACGaUGCgcuUGCGCCCGuGCGCGGu -3'
miRNA:   3'- -UGAGG------UGC-ACG---ACGCGGGU-CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 89477 0.66 0.652887
Target:  5'- cGCgUCACGUGCgcggcgGCGagCCGguacGCGCGGGu -3'
miRNA:   3'- -UGaGGUGCACGa-----CGCg-GGU----CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 89921 0.7 0.401308
Target:  5'- uCUCCACGcuguaGCcGCGCCCcagguccgcgGGCGCGGc -3'
miRNA:   3'- uGAGGUGCa----CGaCGCGGG----------UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 89989 0.66 0.652887
Target:  5'- -gUgCACGUGCcGCGCa-GGCuGCGGGc -3'
miRNA:   3'- ugAgGUGCACGaCGCGggUCG-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 91434 0.66 0.623307
Target:  5'- cGCUCCacacgaACGUGCUGaacugGUCCGGgGCcaGGGu -3'
miRNA:   3'- -UGAGG------UGCACGACg----CGGGUCgCG--CCC- -5'
29609 5' -62.1 NC_006151.1 + 94719 0.66 0.603607
Target:  5'- cGCUCCAgcCGcGCcacgGCGuCCCGGCGCGc- -3'
miRNA:   3'- -UGAGGU--GCaCGa---CGC-GGGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 94937 0.71 0.353882
Target:  5'- uGCUCCGCGaUGCgGaCGCgCAGCGCGu- -3'
miRNA:   3'- -UGAGGUGC-ACGaC-GCGgGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 96582 0.73 0.265254
Target:  5'- cGCcUCGCG-GCgcgagGCGCCgGGCGCGGGc -3'
miRNA:   3'- -UGaGGUGCaCGa----CGCGGgUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 97268 0.67 0.574219
Target:  5'- gGC-CCACacggGCaGCGCCuCGGCgGCGGGc -3'
miRNA:   3'- -UGaGGUGca--CGaCGCGG-GUCG-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 97725 0.71 0.324535
Target:  5'- aGCcCCccgaggACGUGCaGCGCgCGGUGCGGGa -3'
miRNA:   3'- -UGaGG------UGCACGaCGCGgGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 97841 0.68 0.479528
Target:  5'- --gUCACGUGC-GCGCgCAGCGCGu- -3'
miRNA:   3'- ugaGGUGCACGaCGCGgGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 98000 0.66 0.623307
Target:  5'- gGCguggCCGCGUagGCgGCGCcggCCAGgucCGCGGGg -3'
miRNA:   3'- -UGa---GGUGCA--CGaCGCG---GGUC---GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 98133 0.7 0.409596
Target:  5'- aGC-CCACG-GUuagUGUGCCCGGCGCGa- -3'
miRNA:   3'- -UGaGGUGCaCG---ACGCGGGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 98218 0.69 0.452585
Target:  5'- -gUgCGCG-GCgGCGCCCGcGCGCGGa -3'
miRNA:   3'- ugAgGUGCaCGaCGCGGGU-CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 99065 0.7 0.393127
Target:  5'- -gUgCGCGaGCUGCGCCCgggcaccguGGCGCGGc -3'
miRNA:   3'- ugAgGUGCaCGACGCGGG---------UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 100897 0.7 0.385055
Target:  5'- uGCgCCGCG-GCgcgcgcGCGCCCgacgacgcgAGCGCGGGc -3'
miRNA:   3'- -UGaGGUGCaCGa-----CGCGGG---------UCGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.