miRNA display CGI


Results 101 - 120 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 101650 0.66 0.603607
Target:  5'- --gCCGcCGUGCccGCGCUCuacGGCGUGGGc -3'
miRNA:   3'- ugaGGU-GCACGa-CGCGGG---UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 102267 0.68 0.507232
Target:  5'- -aUCCugGgcgcGCUGCcggagcgcgGCCCGGC-CGGGg -3'
miRNA:   3'- ugAGGugCa---CGACG---------CGGGUCGcGCCC- -5'
29609 5' -62.1 NC_006151.1 + 102484 0.77 0.138811
Target:  5'- aGCUCUcgGCGUGCUucaugGaCGCCgCGGCGCGGGa -3'
miRNA:   3'- -UGAGG--UGCACGA-----C-GCGG-GUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 102678 0.75 0.210013
Target:  5'- gACgCCGUGgacGCggggGCGCCCGGCGCGGGc -3'
miRNA:   3'- -UGaGGUGCa--CGa---CGCGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 103271 0.67 0.562551
Target:  5'- gGCggCCACGUGCUGaGCCaggagacgcgcGCGCGGc -3'
miRNA:   3'- -UGa-GGUGCACGACgCGGgu---------CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 104158 0.69 0.435089
Target:  5'- gACgCCGCGgaGCUGCGCCCcgccgccgAGCGCGc- -3'
miRNA:   3'- -UGaGGUGCa-CGACGCGGG--------UCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 106660 0.68 0.488683
Target:  5'- gGCg-CACGUGCgcgaggccgcgGCGCUCGGCGCGccGGg -3'
miRNA:   3'- -UGagGUGCACGa----------CGCGGGUCGCGC--CC- -5'
29609 5' -62.1 NC_006151.1 + 106942 0.66 0.643032
Target:  5'- aGCUCCugGgGCgaGCGCCUgcuGGCGCu-- -3'
miRNA:   3'- -UGAGGugCaCGa-CGCGGG---UCGCGccc -5'
29609 5' -62.1 NC_006151.1 + 111042 0.69 0.470457
Target:  5'- -gUCCACGgGCaggGCGCCCucgagcgucuGCGCGGu -3'
miRNA:   3'- ugAGGUGCaCGa--CGCGGGu---------CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 112378 0.66 0.652887
Target:  5'- -gUCCACGUcGaaGuCGCgCAGCGCGGc -3'
miRNA:   3'- ugAGGUGCA-CgaC-GCGgGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 113035 0.67 0.583985
Target:  5'- uGCgCCGgGUGCUGCGCggcggcggAGCGCGaGGa -3'
miRNA:   3'- -UGaGGUgCACGACGCGgg------UCGCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 113408 0.67 0.536549
Target:  5'- uGCUCaCGCGcgcgcacuggcuggcGCUGCGCcgcuuCCGGCGCGGc -3'
miRNA:   3'- -UGAG-GUGCa--------------CGACGCG-----GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 114124 0.68 0.516618
Target:  5'- uGCcCCACGUGCgccGcCGCCgAGCcGCGGc -3'
miRNA:   3'- -UGaGGUGCACGa--C-GCGGgUCG-CGCCc -5'
29609 5' -62.1 NC_006151.1 + 114308 0.68 0.526074
Target:  5'- cCUaCUACGUGCUGCGCgacgggggCCuGCGCGa- -3'
miRNA:   3'- uGA-GGUGCACGACGCG--------GGuCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 114431 0.67 0.554808
Target:  5'- --aCCGCGUGCUGgacCGCCU-GCuCGGGg -3'
miRNA:   3'- ugaGGUGCACGAC---GCGGGuCGcGCCC- -5'
29609 5' -62.1 NC_006151.1 + 116971 0.66 0.631198
Target:  5'- cCUCCACGUcGCUggacgugaggcgcugGUGCCgCAGCaccacgcgcucccccGCGGGc -3'
miRNA:   3'- uGAGGUGCA-CGA---------------CGCGG-GUCG---------------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 117239 0.72 0.310555
Target:  5'- cGCgUCCACGUcgGC-GgGCCCgaGGCGCGGGc -3'
miRNA:   3'- -UG-AGGUGCA--CGaCgCGGG--UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 117782 0.71 0.369243
Target:  5'- gGCUCCggGCGggGCgccaCGCCCGGCgggGCGGGg -3'
miRNA:   3'- -UGAGG--UGCa-CGac--GCGGGUCG---CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 118734 0.71 0.331699
Target:  5'- cACggCUACGUGCUGgGCCCGGCGg--- -3'
miRNA:   3'- -UGa-GGUGCACGACgCGGGUCGCgccc -5'
29609 5' -62.1 NC_006151.1 + 119067 0.66 0.593783
Target:  5'- cCUCCGCGgGC-GCGCCCgucucgcaGGCcGCGGc -3'
miRNA:   3'- uGAGGUGCaCGaCGCGGG--------UCG-CGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.