miRNA display CGI


Results 121 - 140 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 119959 0.68 0.479528
Target:  5'- uACUCgGgCGcGCUGUGCCCGGCGaCGa- -3'
miRNA:   3'- -UGAGgU-GCaCGACGCGGGUCGC-GCcc -5'
29609 5' -62.1 NC_006151.1 + 120096 0.69 0.452585
Target:  5'- gUUCCAgccgGUGCUGCGCCgCcGCGUGGu -3'
miRNA:   3'- uGAGGUg---CACGACGCGG-GuCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 121068 0.68 0.479528
Target:  5'- gGCUUCACGUGCU-CGCagacgggcggCGGCGcCGGGc -3'
miRNA:   3'- -UGAGGUGCACGAcGCGg---------GUCGC-GCCC- -5'
29609 5' -62.1 NC_006151.1 + 121878 0.72 0.310555
Target:  5'- cGCUCacguGCGcGCUGCGCCUGgcgcucgcguacGCGCGGGc -3'
miRNA:   3'- -UGAGg---UGCaCGACGCGGGU------------CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 122455 0.67 0.545174
Target:  5'- gGCgUCCACGgcgGCggcggGCGCCgaGGC-CGGGg -3'
miRNA:   3'- -UG-AGGUGCa--CGa----CGCGGg-UCGcGCCC- -5'
29609 5' -62.1 NC_006151.1 + 123829 0.7 0.417991
Target:  5'- uGCUCCACaccacGCUGCaGCU--GCGCGGGg -3'
miRNA:   3'- -UGAGGUGca---CGACG-CGGguCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 125572 0.72 0.317487
Target:  5'- aACUCCAUGcGC-GUGCCCggcgAGCGCGGc -3'
miRNA:   3'- -UGAGGUGCaCGaCGCGGG----UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 126151 0.67 0.554808
Target:  5'- gGCUgCugGUGCUGgccgGCCUGGuCGCGGc -3'
miRNA:   3'- -UGAgGugCACGACg---CGGGUC-GCGCCc -5'
29609 5' -62.1 NC_006151.1 + 127977 0.67 0.583985
Target:  5'- -gUCCACGUacucgugcggcgGCUccGCGUCgCGGuCGCGGGg -3'
miRNA:   3'- ugAGGUGCA------------CGA--CGCGG-GUC-GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 128781 0.69 0.452585
Target:  5'- cGCUCCACG-GCcucgGuCGCCUcggcgAGCGCGGc -3'
miRNA:   3'- -UGAGGUGCaCGa---C-GCGGG-----UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 129597 0.68 0.507232
Target:  5'- aACUCCGCGagcggGCacgUGCGCaCCAGCG-GGu -3'
miRNA:   3'- -UGAGGUGCa----CG---ACGCG-GGUCGCgCCc -5'
29609 5' -62.1 NC_006151.1 + 129645 0.66 0.623307
Target:  5'- aGCUCCGCGUaGU--CGUCCAGCGCc-- -3'
miRNA:   3'- -UGAGGUGCA-CGacGCGGGUCGCGccc -5'
29609 5' -62.1 NC_006151.1 + 129741 0.68 0.526074
Target:  5'- gGC-CCGCGaggcGCUGCaGCaCCAGCGCGa- -3'
miRNA:   3'- -UGaGGUGCa---CGACG-CG-GGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 130366 0.7 0.409596
Target:  5'- gACggCCGCGcGCgccgcgGCGUCCAGCGCGa- -3'
miRNA:   3'- -UGa-GGUGCaCGa-----CGCGGGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 131097 0.72 0.290452
Target:  5'- -gUCCACGUcgGCgggGgGCCCggccgcGGCGCGGGa -3'
miRNA:   3'- ugAGGUGCA--CGa--CgCGGG------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 131492 0.66 0.623307
Target:  5'- cCUgCAgGUGCaccagGaGCCCcGCGCGGGg -3'
miRNA:   3'- uGAgGUgCACGa----CgCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 131927 0.67 0.574219
Target:  5'- cCUCCGCgGUGCUGCcguagcugGCCacgggcgAGgGCGGGc -3'
miRNA:   3'- uGAGGUG-CACGACG--------CGGg------UCgCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 132306 0.66 0.651902
Target:  5'- -gUCCGCGUGCagGCGCCaCGagagcucGCGCGc- -3'
miRNA:   3'- ugAGGUGCACGa-CGCGG-GU-------CGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 132750 0.66 0.603607
Target:  5'- cGCUCCAUG----GCGCCCAGCagcgcCGGGc -3'
miRNA:   3'- -UGAGGUGCacgaCGCGGGUCGc----GCCC- -5'
29609 5' -62.1 NC_006151.1 + 133152 0.66 0.63317
Target:  5'- gACUCgGCG-GCgGCG-CgGGCGUGGGc -3'
miRNA:   3'- -UGAGgUGCaCGaCGCgGgUCGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.