miRNA display CGI


Results 61 - 80 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 89989 0.66 0.652887
Target:  5'- -gUgCACGUGCcGCGCa-GGCuGCGGGc -3'
miRNA:   3'- ugAgGUGCACGaCGCGggUCG-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 89921 0.7 0.401308
Target:  5'- uCUCCACGcuguaGCcGCGCCCcagguccgcgGGCGCGGc -3'
miRNA:   3'- uGAGGUGCa----CGaCGCGGG----------UCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 89477 0.66 0.652887
Target:  5'- cGCgUCACGUGCgcggcgGCGagCCGguacGCGCGGGu -3'
miRNA:   3'- -UGaGGUGCACGa-----CGCg-GGU----CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 89028 0.72 0.310555
Target:  5'- cGCUCCcggcacACGaUGCgcuUGCGCCCGuGCGCGGu -3'
miRNA:   3'- -UGAGG------UGC-ACG---ACGCGGGU-CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 88860 0.71 0.369243
Target:  5'- cGCUcCCGCG-GgaGCuCCgGGCGCGGGg -3'
miRNA:   3'- -UGA-GGUGCaCgaCGcGGgUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 87180 0.66 0.602624
Target:  5'- cGC-CCGCGgcgccgccgcagcUGCUGcCGCCCGGggccguCGUGGGa -3'
miRNA:   3'- -UGaGGUGC-------------ACGAC-GCGGGUC------GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 85601 0.69 0.460582
Target:  5'- aGCUCgGCGcGCUcGUGCCCAacgcgccgccgccGCGCGGc -3'
miRNA:   3'- -UGAGgUGCaCGA-CGCGGGU-------------CGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 85148 0.66 0.603607
Target:  5'- uGCaCCGCGUGCggcagGgGgCCGGCgccGCGGGc -3'
miRNA:   3'- -UGaGGUGCACGa----CgCgGGUCG---CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 84268 0.66 0.643032
Target:  5'- uGCUCgACGUGacgcgccugccCUGCaCCCAGaCGCGcGGc -3'
miRNA:   3'- -UGAGgUGCAC-----------GACGcGGGUC-GCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 83637 0.73 0.265254
Target:  5'- gGCggCCugGUGCUGCGCCguGaCGaGGGc -3'
miRNA:   3'- -UGa-GGugCACGACGCGGguC-GCgCCC- -5'
29609 5' -62.1 NC_006151.1 + 83343 0.75 0.186298
Target:  5'- cGCgUCCACGUGCUccccgGCGCgC-GCGCGGGc -3'
miRNA:   3'- -UG-AGGUGCACGA-----CGCGgGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 82867 0.66 0.652887
Target:  5'- uCUCCAU---CUG-GCCgCGGCGCGGGu -3'
miRNA:   3'- uGAGGUGcacGACgCGG-GUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 82613 0.71 0.346373
Target:  5'- gGC-CCGCGcGCggGCGCCgCggugGGCGCGGGa -3'
miRNA:   3'- -UGaGGUGCaCGa-CGCGG-G----UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 82400 0.7 0.377093
Target:  5'- aGCUCCGCGcccgaggGCgGC-CCCgagaGGCGCGGGc -3'
miRNA:   3'- -UGAGGUGCa------CGaCGcGGG----UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 80685 0.67 0.564491
Target:  5'- --gUCugG-GUUcGCgGCCCGGCGCGGGc -3'
miRNA:   3'- ugaGGugCaCGA-CG-CGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 80403 0.71 0.331699
Target:  5'- -aUCCACGUuagGCGCCCGGUgggaaauguguGCGGGg -3'
miRNA:   3'- ugAGGUGCAcgaCGCGGGUCG-----------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 78638 0.66 0.64106
Target:  5'- cGCcgaCGCGUGCgagcugguggagGCGgCCggGGCGCGGGu -3'
miRNA:   3'- -UGag-GUGCACGa-----------CGCgGG--UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 78445 0.67 0.583007
Target:  5'- --aCCGCGUGCUGCGCgaggcgaccgucuUCGGCGaGGu -3'
miRNA:   3'- ugaGGUGCACGACGCG-------------GGUCGCgCCc -5'
29609 5' -62.1 NC_006151.1 + 78316 0.66 0.602624
Target:  5'- uGCUCgACaG-GCUggacgaGCGCCCcggggcgGGCGCGGGc -3'
miRNA:   3'- -UGAGgUG-CaCGA------CGCGGG-------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 78219 0.66 0.603607
Target:  5'- gGCUCCACGUcGCUcacggGCGCgCAGCGg--- -3'
miRNA:   3'- -UGAGGUGCA-CGA-----CGCGgGUCGCgccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.