miRNA display CGI


Results 81 - 100 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 77217 0.66 0.593783
Target:  5'- cGCgccgCCGCGUGUgUGCGCCgggaGGCgccccccgGCGGGu -3'
miRNA:   3'- -UGa---GGUGCACG-ACGCGGg---UCG--------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 77081 0.7 0.385055
Target:  5'- gGCUcaCCACGUGCga-GCUgaAGCGCGGGc -3'
miRNA:   3'- -UGA--GGUGCACGacgCGGg-UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 76635 0.71 0.361506
Target:  5'- cGCUCCAuCGUGUgGCGacgaCCGcGUGCGGGc -3'
miRNA:   3'- -UGAGGU-GCACGaCGCg---GGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 75400 0.66 0.642047
Target:  5'- gGCgggUGCGUGCgcggGUccgggagGCCCGGCGUGGGc -3'
miRNA:   3'- -UGag-GUGCACGa---CG-------CGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 75271 0.72 0.283981
Target:  5'- gGCUCCugGcGCaGCGCcgCCAGCGUGGc -3'
miRNA:   3'- -UGAGGugCaCGaCGCG--GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 75129 0.73 0.253334
Target:  5'- -gUCgGCGgccgGCggcGCgGCCCAGCGCGGGc -3'
miRNA:   3'- ugAGgUGCa---CGa--CG-CGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 74556 0.7 0.385055
Target:  5'- cCUCCugGgGCUGguUGCCCAGCGggucccCGGGc -3'
miRNA:   3'- uGAGGugCaCGAC--GCGGGUCGC------GCCC- -5'
29609 5' -62.1 NC_006151.1 + 73704 0.67 0.535594
Target:  5'- uGCgCCGCGUGCUGgGCCacgggcuGGCGCa-- -3'
miRNA:   3'- -UGaGGUGCACGACgCGGg------UCGCGccc -5'
29609 5' -62.1 NC_006151.1 + 73307 0.71 0.353882
Target:  5'- -gUCCGCGU-CcGCGUCCAGCauggGCGGGg -3'
miRNA:   3'- ugAGGUGCAcGaCGCGGGUCG----CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 73096 0.71 0.37237
Target:  5'- cCUCCucgcCGUGCaccucgccggcggcGCGCCC-GCGCGGGu -3'
miRNA:   3'- uGAGGu---GCACGa-------------CGCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 72659 0.67 0.545174
Target:  5'- cGCU-CGCGUGCUGgaagcaGCCCuucaGCGGGg -3'
miRNA:   3'- -UGAgGUGCACGACg-----CGGGucg-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 72019 0.74 0.220206
Target:  5'- --aCCACGU-CgGCGCCCcGCGCGGGc -3'
miRNA:   3'- ugaGGUGCAcGaCGCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 71680 0.71 0.331699
Target:  5'- cACgggCCGCGUGCcgagcgUGuCGCCCAGcCGCGaGGc -3'
miRNA:   3'- -UGa--GGUGCACG------AC-GCGGGUC-GCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 69555 0.66 0.652887
Target:  5'- cGCUcgCCACGUgGCUGCGCaCCGGgugcCGCGc- -3'
miRNA:   3'- -UGA--GGUGCA-CGACGCG-GGUC----GCGCcc -5'
29609 5' -62.1 NC_006151.1 + 69095 0.7 0.388271
Target:  5'- aGCUCgGCGUGCcGcCGCaCCAGCucccgccgcgccuccGCGGGc -3'
miRNA:   3'- -UGAGgUGCACGaC-GCG-GGUCG---------------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 65811 0.66 0.623307
Target:  5'- gACgugCCGCGguggauggGCgGcCGCgCCAGCGCGGc -3'
miRNA:   3'- -UGa--GGUGCa-------CGaC-GCG-GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 65722 0.66 0.613451
Target:  5'- cCUCgCGCG-GCUGCGCgCGGCccaggagcCGGGa -3'
miRNA:   3'- uGAG-GUGCaCGACGCGgGUCGc-------GCCC- -5'
29609 5' -62.1 NC_006151.1 + 64924 0.67 0.587901
Target:  5'- cCUCCACG-GCguacucgcgcgucaGCGCCUGGCcgcgcuGCGGGc -3'
miRNA:   3'- uGAGGUGCaCGa-------------CGCGGGUCG------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 64627 0.69 0.426489
Target:  5'- cGCcggCCGCGggGCgcgGCGCCCcGCGCaGGa -3'
miRNA:   3'- -UGa--GGUGCa-CGa--CGCGGGuCGCGcCC- -5'
29609 5' -62.1 NC_006151.1 + 64473 0.71 0.361506
Target:  5'- cGCgccgCCGCG-GCgggGaCGCCCgcgGGCGCGGGc -3'
miRNA:   3'- -UGa---GGUGCaCGa--C-GCGGG---UCGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.