Results 101 - 120 of 148 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 62283 | 0.76 | 0.181848 |
Target: 5'- cUUCUGCGUGCUcGUGgCCAGCGCGGc -3' miRNA: 3'- uGAGGUGCACGA-CGCgGGUCGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 61726 | 0.67 | 0.544213 |
Target: 5'- cACggCCAcCGUGCUGCuggcgcacGCCCuguacgcGGuCGCGGGg -3' miRNA: 3'- -UGa-GGU-GCACGACG--------CGGG-------UC-GCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 60926 | 0.66 | 0.599675 |
Target: 5'- cGCgCCAUGgugggcgaguagaGCUGC-CCCAGCGUGGa -3' miRNA: 3'- -UGaGGUGCa------------CGACGcGGGUCGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 60831 | 0.67 | 0.554808 |
Target: 5'- aGCUCCACGaGCUGCGCgUugauCGUGGc -3' miRNA: 3'- -UGAGGUGCaCGACGCGgGuc--GCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 59528 | 0.76 | 0.177492 |
Target: 5'- aGCgCCGCGUGa-GgGCCCAGCGCGcGGg -3' miRNA: 3'- -UGaGGUGCACgaCgCGGGUCGCGC-CC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 58852 | 0.68 | 0.526074 |
Target: 5'- cCagCGCGUGgaGCucGCCCGGCGCGccGGg -3' miRNA: 3'- uGagGUGCACgaCG--CGGGUCGCGC--CC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 58683 | 0.68 | 0.497919 |
Target: 5'- --aCCGCGccgUGCgcgccGCGCCaCAGCGcCGGGu -3' miRNA: 3'- ugaGGUGC---ACGa----CGCGG-GUCGC-GCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 58487 | 0.75 | 0.200229 |
Target: 5'- gGCgUCCACGUGgaUGaUGCCCGcGCGCGGGc -3' miRNA: 3'- -UG-AGGUGCACg-AC-GCGGGU-CGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 57853 | 0.66 | 0.623307 |
Target: 5'- uGCUCCACGgcGCUggucgcGCGCCCcGC-CGGc -3' miRNA: 3'- -UGAGGUGCa-CGA------CGCGGGuCGcGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 57269 | 0.69 | 0.470457 |
Target: 5'- cCUCgACGgccucGCgcagcaggGCGUCCAGCGCGGc -3' miRNA: 3'- uGAGgUGCa----CGa-------CGCGGGUCGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 56444 | 0.69 | 0.432498 |
Target: 5'- cGCUCgacgagacgCGCGUGCUGCcccacuaccccaucGCCCAGCGCc-- -3' miRNA: 3'- -UGAG---------GUGCACGACG--------------CGGGUCGCGccc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 54814 | 0.68 | 0.506297 |
Target: 5'- ---gCGCGUGCUggcgcgcgacGCGCUCacgggcgAGCGCGGGg -3' miRNA: 3'- ugagGUGCACGA----------CGCGGG-------UCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 54601 | 0.66 | 0.593783 |
Target: 5'- cCUCgGCGUGgucccggUGCGCCgGGCGCgccccGGGg -3' miRNA: 3'- uGAGgUGCACg------ACGCGGgUCGCG-----CCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 52582 | 0.69 | 0.461475 |
Target: 5'- uACUCgGC--GCUGcCGCCCuGCGCGuGGa -3' miRNA: 3'- -UGAGgUGcaCGAC-GCGGGuCGCGC-CC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 51475 | 0.66 | 0.603607 |
Target: 5'- uGC-CCACagcccGaCUGCGCCCAGcCGcCGGGc -3' miRNA: 3'- -UGaGGUGca---C-GACGCGGGUC-GC-GCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 50459 | 0.69 | 0.443788 |
Target: 5'- cGC-CCGCGggcGCU-CGCgCCAGCGCGGc -3' miRNA: 3'- -UGaGGUGCa--CGAcGCG-GGUCGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 50007 | 0.67 | 0.562551 |
Target: 5'- uGCgcgCCGCGcGCgcggcccgcgcgGCGCCCccgGGCGCGGc -3' miRNA: 3'- -UGa--GGUGCaCGa-----------CGCGGG---UCGCGCCc -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 49193 | 0.66 | 0.63317 |
Target: 5'- uGCUgaaCACGacGCUGacCGUgCGGCGCGGGg -3' miRNA: 3'- -UGAg--GUGCa-CGAC--GCGgGUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 49044 | 0.78 | 0.119473 |
Target: 5'- gGC-CCACGgGCUggccuucaGCGUCCGGCGCGGGg -3' miRNA: 3'- -UGaGGUGCaCGA--------CGCGGGUCGCGCCC- -5' |
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29609 | 5' | -62.1 | NC_006151.1 | + | 39271 | 0.7 | 0.393127 |
Target: 5'- cGC-CCAggggGUGCUGCuGCUCucGGCGCGGGa -3' miRNA: 3'- -UGaGGUg---CACGACG-CGGG--UCGCGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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