miRNA display CGI


Results 41 - 60 of 148 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 82867 0.66 0.652887
Target:  5'- uCUCCAU---CUG-GCCgCGGCGCGGGu -3'
miRNA:   3'- uGAGGUGcacGACgCGG-GUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 89477 0.66 0.652887
Target:  5'- cGCgUCACGUGCgcggcgGCGagCCGguacGCGCGGGu -3'
miRNA:   3'- -UGaGGUGCACGa-----CGCg-GGU----CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 89989 0.66 0.652887
Target:  5'- -gUgCACGUGCcGCGCa-GGCuGCGGGc -3'
miRNA:   3'- ugAgGUGCACGaCGCGggUCG-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 112378 0.66 0.652887
Target:  5'- -gUCCACGUcGaaGuCGCgCAGCGCGGc -3'
miRNA:   3'- ugAGGUGCA-CgaC-GCGgGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 135454 0.66 0.652887
Target:  5'- gGCaggCCugGUaGgUGCGCgCCAgcguguccGCGCGGGc -3'
miRNA:   3'- -UGa--GGugCA-CgACGCG-GGU--------CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 78638 0.66 0.64106
Target:  5'- cGCcgaCGCGUGCgagcugguggagGCGgCCggGGCGCGGGu -3'
miRNA:   3'- -UGag-GUGCACGa-----------CGCgGG--UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 10508 0.66 0.63317
Target:  5'- cGCcgCCGCaG-GC-GCGucCCCGGCGCGGGc -3'
miRNA:   3'- -UGa-GGUG-CaCGaCGC--GGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 23894 0.66 0.623307
Target:  5'- -gUUCACGgGCUGgGCgUCGGuCGCGGGc -3'
miRNA:   3'- ugAGGUGCaCGACgCG-GGUC-GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 91434 0.66 0.623307
Target:  5'- cGCUCCacacgaACGUGCUGaacugGUCCGGgGCcaGGGu -3'
miRNA:   3'- -UGAGG------UGCACGACg----CGGGUCgCG--CCC- -5'
29609 5' -62.1 NC_006151.1 + 131492 0.66 0.623307
Target:  5'- cCUgCAgGUGCaccagGaGCCCcGCGCGGGg -3'
miRNA:   3'- uGAgGUgCACGa----CgCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 57853 0.66 0.623307
Target:  5'- uGCUCCACGgcGCUggucgcGCGCCCcGC-CGGc -3'
miRNA:   3'- -UGAGGUGCa-CGA------CGCGGGuCGcGCCc -5'
29609 5' -62.1 NC_006151.1 + 65811 0.66 0.623307
Target:  5'- gACgugCCGCGguggauggGCgGcCGCgCCAGCGCGGc -3'
miRNA:   3'- -UGa--GGUGCa-------CGaC-GCG-GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 20202 0.66 0.623307
Target:  5'- gAUUCCGCGcGCaGCGCCgGGcCGCGcaGGc -3'
miRNA:   3'- -UGAGGUGCaCGaCGCGGgUC-GCGC--CC- -5'
29609 5' -62.1 NC_006151.1 + 98000 0.66 0.623307
Target:  5'- gGCguggCCGCGUagGCgGCGCcggCCAGgucCGCGGGg -3'
miRNA:   3'- -UGa---GGUGCA--CGaCGCG---GGUC---GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 129645 0.66 0.623307
Target:  5'- aGCUCCGCGUaGU--CGUCCAGCGCc-- -3'
miRNA:   3'- -UGAGGUGCA-CGacGCGGGUCGCGccc -5'
29609 5' -62.1 NC_006151.1 + 116971 0.66 0.631198
Target:  5'- cCUCCACGUcGCUggacgugaggcgcugGUGCCgCAGCaccacgcgcucccccGCGGGc -3'
miRNA:   3'- uGAGGUGCA-CGA---------------CGCGG-GUCG---------------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 136961 0.66 0.632184
Target:  5'- uGCgCCGCcUGCUggagcuggccgccGCGCCgGGCgGCGGGc -3'
miRNA:   3'- -UGaGGUGcACGA-------------CGCGGgUCG-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 31949 0.66 0.63317
Target:  5'- --cCCGCGUGaUGaCGCCgGGgaCGCGGGa -3'
miRNA:   3'- ugaGGUGCACgAC-GCGGgUC--GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 49193 0.66 0.63317
Target:  5'- uGCUgaaCACGacGCUGacCGUgCGGCGCGGGg -3'
miRNA:   3'- -UGAg--GUGCa-CGAC--GCGgGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 133152 0.66 0.63317
Target:  5'- gACUCgGCG-GCgGCG-CgGGCGUGGGc -3'
miRNA:   3'- -UGAGgUGCaCGaCGCgGgUCGCGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.