Results 81 - 100 of 148 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 2217 | 0.66 | 0.593783 |
Target: 5'- uCUCCACG-GC-GCcCCCGGCgGCGGc -3' miRNA: 3'- uGAGGUGCaCGaCGcGGGUCG-CGCCc -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 137276 | 0.66 | 0.593783 |
Target: 5'- uGC-CCGCGggcacGCUcgagGCGgCCAuGCGCGGGu -3' miRNA: 3'- -UGaGGUGCa----CGA----CGCgGGU-CGCGCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 77217 | 0.66 | 0.593783 |
Target: 5'- cGCgccgCCGCGUGUgUGCGCCgggaGGCgccccccgGCGGGu -3' miRNA: 3'- -UGa---GGUGCACG-ACGCGGg---UCG--------CGCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 64924 | 0.67 | 0.587901 |
Target: 5'- cCUCCACG-GCguacucgcgcgucaGCGCCUGGCcgcgcuGCGGGc -3' miRNA: 3'- uGAGGUGCaCGa-------------CGCGGGUCG------CGCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 127977 | 0.67 | 0.583985 |
Target: 5'- -gUCCACGUacucgugcggcgGCUccGCGUCgCGGuCGCGGGg -3' miRNA: 3'- ugAGGUGCA------------CGA--CGCGG-GUC-GCGCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 113035 | 0.67 | 0.583985 |
Target: 5'- uGCgCCGgGUGCUGCGCggcggcggAGCGCGaGGa -3' miRNA: 3'- -UGaGGUgCACGACGCGgg------UCGCGC-CC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 78445 | 0.67 | 0.583007 |
Target: 5'- --aCCGCGUGCUGCGCgaggcgaccgucuUCGGCGaGGu -3' miRNA: 3'- ugaGGUGCACGACGCG-------------GGUCGCgCCc -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 78316 | 0.66 | 0.602624 |
Target: 5'- uGCUCgACaG-GCUggacgaGCGCCCcggggcgGGCGCGGGc -3' miRNA: 3'- -UGAGgUG-CaCGA------CGCGGG-------UCGCGCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 87180 | 0.66 | 0.602624 |
Target: 5'- cGC-CCGCGgcgccgccgcagcUGCUGcCGCCCGGggccguCGUGGGa -3' miRNA: 3'- -UGaGGUGC-------------ACGAC-GCGGGUC------GCGCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 51475 | 0.66 | 0.603607 |
Target: 5'- uGC-CCACagcccGaCUGCGCCCAGcCGcCGGGc -3' miRNA: 3'- -UGaGGUGca---C-GACGCGGGUC-GC-GCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 131492 | 0.66 | 0.623307 |
Target: 5'- cCUgCAgGUGCaccagGaGCCCcGCGCGGGg -3' miRNA: 3'- uGAgGUgCACGa----CgCGGGuCGCGCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 91434 | 0.66 | 0.623307 |
Target: 5'- cGCUCCacacgaACGUGCUGaacugGUCCGGgGCcaGGGu -3' miRNA: 3'- -UGAGG------UGCACGACg----CGGGUCgCG--CCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 23894 | 0.66 | 0.623307 |
Target: 5'- -gUUCACGgGCUGgGCgUCGGuCGCGGGc -3' miRNA: 3'- ugAGGUGCaCGACgCG-GGUC-GCGCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 65722 | 0.66 | 0.613451 |
Target: 5'- cCUCgCGCG-GCUGCGCgCGGCccaggagcCGGGa -3' miRNA: 3'- uGAG-GUGCaCGACGCGgGUCGc-------GCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 132750 | 0.66 | 0.603607 |
Target: 5'- cGCUCCAUG----GCGCCCAGCagcgcCGGGc -3' miRNA: 3'- -UGAGGUGCacgaCGCGGGUCGc----GCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 94719 | 0.66 | 0.603607 |
Target: 5'- cGCUCCAgcCGcGCcacgGCGuCCCGGCGCGc- -3' miRNA: 3'- -UGAGGU--GCaCGa---CGC-GGGUCGCGCcc -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 78219 | 0.66 | 0.603607 |
Target: 5'- gGCUCCACGUcGCUcacggGCGCgCAGCGg--- -3' miRNA: 3'- -UGAGGUGCA-CGA-----CGCGgGUCGCgccc -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 15026 | 0.66 | 0.603607 |
Target: 5'- gACcCCGaggagGUGC-GCGUCCAcggcGCGCGGGg -3' miRNA: 3'- -UGaGGUg----CACGaCGCGGGU----CGCGCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 101650 | 0.66 | 0.603607 |
Target: 5'- --gCCGcCGUGCccGCGCUCuacGGCGUGGGc -3' miRNA: 3'- ugaGGU-GCACGa-CGCGGG---UCGCGCCC- -5' |
|||||||
29609 | 5' | -62.1 | NC_006151.1 | + | 85148 | 0.66 | 0.603607 |
Target: 5'- uGCaCCGCGUGCggcagGgGgCCGGCgccGCGGGc -3' miRNA: 3'- -UGaGGUGCACGa----CgCgGGUCG---CGCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home