miRNA display CGI


Results 121 - 140 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 114308 0.68 0.526074
Target:  5'- cCUaCUACGUGCUGCGCgacgggggCCuGCGCGa- -3'
miRNA:   3'- uGA-GGUGCACGACGCG--------GGuCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 9466 0.68 0.516618
Target:  5'- cUUCCGCGUccGCUucggccccccGCgGCCgCGGCGUGGGa -3'
miRNA:   3'- uGAGGUGCA--CGA----------CG-CGG-GUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 80685 0.67 0.564491
Target:  5'- --gUCugG-GUUcGCgGCCCGGCGCGGGc -3'
miRNA:   3'- ugaGGugCaCGA-CG-CGGGUCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 11691 0.67 0.574219
Target:  5'- gACggggCCGCGggacgGC-GCGUgCGGCGCGGa -3'
miRNA:   3'- -UGa---GGUGCa----CGaCGCGgGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 97268 0.67 0.574219
Target:  5'- gGC-CCACacggGCaGCGCCuCGGCgGCGGGc -3'
miRNA:   3'- -UGaGGUGca--CGaCGCGG-GUCG-CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 51475 0.66 0.603607
Target:  5'- uGC-CCACagcccGaCUGCGCCCAGcCGcCGGGc -3'
miRNA:   3'- -UGaGGUGca---C-GACGCGGGUC-GC-GCCC- -5'
29609 5' -62.1 NC_006151.1 + 87180 0.66 0.602624
Target:  5'- cGC-CCGCGgcgccgccgcagcUGCUGcCGCCCGGggccguCGUGGGa -3'
miRNA:   3'- -UGaGGUGC-------------ACGAC-GCGGGUC------GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 78316 0.66 0.602624
Target:  5'- uGCUCgACaG-GCUggacgaGCGCCCcggggcgGGCGCGGGc -3'
miRNA:   3'- -UGAGgUG-CaCGA------CGCGGG-------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 60926 0.66 0.599675
Target:  5'- cGCgCCAUGgugggcgaguagaGCUGC-CCCAGCGUGGa -3'
miRNA:   3'- -UGaGGUGCa------------CGACGcGGGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 119067 0.66 0.593783
Target:  5'- cCUCCGCGgGC-GCGCCCgucucgcaGGCcGCGGc -3'
miRNA:   3'- uGAGGUGCaCGaCGCGGG--------UCG-CGCCc -5'
29609 5' -62.1 NC_006151.1 + 54601 0.66 0.593783
Target:  5'- cCUCgGCGUGgucccggUGCGCCgGGCGCgccccGGGg -3'
miRNA:   3'- uGAGgUGCACg------ACGCGGgUCGCG-----CCC- -5'
29609 5' -62.1 NC_006151.1 + 2217 0.66 0.593783
Target:  5'- uCUCCACG-GC-GCcCCCGGCgGCGGc -3'
miRNA:   3'- uGAGGUGCaCGaCGcGGGUCG-CGCCc -5'
29609 5' -62.1 NC_006151.1 + 137276 0.66 0.593783
Target:  5'- uGC-CCGCGggcacGCUcgagGCGgCCAuGCGCGGGu -3'
miRNA:   3'- -UGaGGUGCa----CGA----CGCgGGU-CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 77217 0.66 0.593783
Target:  5'- cGCgccgCCGCGUGUgUGCGCCgggaGGCgccccccgGCGGGu -3'
miRNA:   3'- -UGa---GGUGCACG-ACGCGGg---UCG--------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 64924 0.67 0.587901
Target:  5'- cCUCCACG-GCguacucgcgcgucaGCGCCUGGCcgcgcuGCGGGc -3'
miRNA:   3'- uGAGGUGCaCGa-------------CGCGGGUCG------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 127977 0.67 0.583985
Target:  5'- -gUCCACGUacucgugcggcgGCUccGCGUCgCGGuCGCGGGg -3'
miRNA:   3'- ugAGGUGCA------------CGA--CGCGG-GUC-GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 113035 0.67 0.583985
Target:  5'- uGCgCCGgGUGCUGCGCggcggcggAGCGCGaGGa -3'
miRNA:   3'- -UGaGGUgCACGACGCGgg------UCGCGC-CC- -5'
29609 5' -62.1 NC_006151.1 + 78445 0.67 0.583007
Target:  5'- --aCCGCGUGCUGCGCgaggcgaccgucuUCGGCGaGGu -3'
miRNA:   3'- ugaGGUGCACGACGCG-------------GGUCGCgCCc -5'
29609 5' -62.1 NC_006151.1 + 131927 0.67 0.574219
Target:  5'- cCUCCGCgGUGCUGCcguagcugGCCacgggcgAGgGCGGGc -3'
miRNA:   3'- uGAGGUG-CACGACG--------CGGg------UCgCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 2621 0.67 0.574219
Target:  5'- --aCCGgG-GUccgGgGCCCGGCGCGGGu -3'
miRNA:   3'- ugaGGUgCaCGa--CgCGGGUCGCGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.