miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29609 5' -62.1 NC_006151.1 + 116971 0.66 0.631198
Target:  5'- cCUCCACGUcGCUggacgugaggcgcugGUGCCgCAGCaccacgcgcucccccGCGGGc -3'
miRNA:   3'- uGAGGUGCA-CGA---------------CGCGG-GUCG---------------CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 129645 0.66 0.623307
Target:  5'- aGCUCCGCGUaGU--CGUCCAGCGCc-- -3'
miRNA:   3'- -UGAGGUGCA-CGacGCGGGUCGCGccc -5'
29609 5' -62.1 NC_006151.1 + 23894 0.66 0.623307
Target:  5'- -gUUCACGgGCUGgGCgUCGGuCGCGGGc -3'
miRNA:   3'- ugAGGUGCaCGACgCG-GGUC-GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 91434 0.66 0.623307
Target:  5'- cGCUCCacacgaACGUGCUGaacugGUCCGGgGCcaGGGu -3'
miRNA:   3'- -UGAGG------UGCACGACg----CGGGUCgCG--CCC- -5'
29609 5' -62.1 NC_006151.1 + 131492 0.66 0.623307
Target:  5'- cCUgCAgGUGCaccagGaGCCCcGCGCGGGg -3'
miRNA:   3'- uGAgGUgCACGa----CgCGGGuCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 57853 0.66 0.623307
Target:  5'- uGCUCCACGgcGCUggucgcGCGCCCcGC-CGGc -3'
miRNA:   3'- -UGAGGUGCa-CGA------CGCGGGuCGcGCCc -5'
29609 5' -62.1 NC_006151.1 + 65811 0.66 0.623307
Target:  5'- gACgugCCGCGguggauggGCgGcCGCgCCAGCGCGGc -3'
miRNA:   3'- -UGa--GGUGCa-------CGaC-GCG-GGUCGCGCCc -5'
29609 5' -62.1 NC_006151.1 + 20202 0.66 0.623307
Target:  5'- gAUUCCGCGcGCaGCGCCgGGcCGCGcaGGc -3'
miRNA:   3'- -UGAGGUGCaCGaCGCGGgUC-GCGC--CC- -5'
29609 5' -62.1 NC_006151.1 + 98000 0.66 0.623307
Target:  5'- gGCguggCCGCGUagGCgGCGCcggCCAGgucCGCGGGg -3'
miRNA:   3'- -UGa---GGUGCA--CGaCGCG---GGUC---GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 65722 0.66 0.613451
Target:  5'- cCUCgCGCG-GCUGCGCgCGGCccaggagcCGGGa -3'
miRNA:   3'- uGAG-GUGCaCGACGCGgGUCGc-------GCCC- -5'
29609 5' -62.1 NC_006151.1 + 51475 0.66 0.603607
Target:  5'- uGC-CCACagcccGaCUGCGCCCAGcCGcCGGGc -3'
miRNA:   3'- -UGaGGUGca---C-GACGCGGGUC-GC-GCCC- -5'
29609 5' -62.1 NC_006151.1 + 85148 0.66 0.603607
Target:  5'- uGCaCCGCGUGCggcagGgGgCCGGCgccGCGGGc -3'
miRNA:   3'- -UGaGGUGCACGa----CgCgGGUCG---CGCCC- -5'
29609 5' -62.1 NC_006151.1 + 101650 0.66 0.603607
Target:  5'- --gCCGcCGUGCccGCGCUCuacGGCGUGGGc -3'
miRNA:   3'- ugaGGU-GCACGa-CGCGGG---UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 15026 0.66 0.603607
Target:  5'- gACcCCGaggagGUGC-GCGUCCAcggcGCGCGGGg -3'
miRNA:   3'- -UGaGGUg----CACGaCGCGGGU----CGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 78219 0.66 0.603607
Target:  5'- gGCUCCACGUcGCUcacggGCGCgCAGCGg--- -3'
miRNA:   3'- -UGAGGUGCA-CGA-----CGCGgGUCGCgccc -5'
29609 5' -62.1 NC_006151.1 + 94719 0.66 0.603607
Target:  5'- cGCUCCAgcCGcGCcacgGCGuCCCGGCGCGc- -3'
miRNA:   3'- -UGAGGU--GCaCGa---CGC-GGGUCGCGCcc -5'
29609 5' -62.1 NC_006151.1 + 132750 0.66 0.603607
Target:  5'- cGCUCCAUG----GCGCCCAGCagcgcCGGGc -3'
miRNA:   3'- -UGAGGUGCacgaCGCGGGUCGc----GCCC- -5'
29609 5' -62.1 NC_006151.1 + 87180 0.66 0.602624
Target:  5'- cGC-CCGCGgcgccgccgcagcUGCUGcCGCCCGGggccguCGUGGGa -3'
miRNA:   3'- -UGaGGUGC-------------ACGAC-GCGGGUC------GCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 78316 0.66 0.602624
Target:  5'- uGCUCgACaG-GCUggacgaGCGCCCcggggcgGGCGCGGGc -3'
miRNA:   3'- -UGAGgUG-CaCGA------CGCGGG-------UCGCGCCC- -5'
29609 5' -62.1 NC_006151.1 + 60926 0.66 0.599675
Target:  5'- cGCgCCAUGgugggcgaguagaGCUGC-CCCAGCGUGGa -3'
miRNA:   3'- -UGaGGUGCa------------CGACGcGGGUCGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.