Results 1 - 20 of 21 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 3334 | 0.75 | 0.451654 |
Target: 5'- gGGAaGACCUCCugguccacgaGGgcgcgggccaccucgGGCGGGCAGUAGg -3' miRNA: 3'- -CCUaCUGGAGG----------CCa--------------CCGCUCGUCAUC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 8477 | 0.66 | 0.909543 |
Target: 5'- cGGAUGGUCggUCGGacggGGCGGGCGGggAGg -3' miRNA: 3'- -CCUACUGGa-GGCCa---CCGCUCGUCa-UC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 23448 | 0.71 | 0.668446 |
Target: 5'- aGGGUGGCC-CCGG-GGCGGGUg---- -3' miRNA: 3'- -CCUACUGGaGGCCaCCGCUCGucauc -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 23869 | 0.66 | 0.903388 |
Target: 5'- cGGUGGCgUUggCGGgGGCGAGCGGg-- -3' miRNA: 3'- cCUACUGgAG--GCCaCCGCUCGUCauc -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 30659 | 0.67 | 0.875033 |
Target: 5'- uGAUGGCCgcgcugguUCCGGgaagccucccccGGCGGGCGGgGGg -3' miRNA: 3'- cCUACUGG--------AGGCCa-----------CCGCUCGUCaUC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 30803 | 0.68 | 0.785768 |
Target: 5'- cGAUGGCC-CCGGgggcacGCGGGCGGgAGg -3' miRNA: 3'- cCUACUGGaGGCCac----CGCUCGUCaUC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 31231 | 0.67 | 0.853991 |
Target: 5'- cGGccGGCCggcCCGGcGaGCGAGCGGgcGg -3' miRNA: 3'- -CCuaCUGGa--GGCCaC-CGCUCGUCauC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 33065 | 0.69 | 0.757684 |
Target: 5'- cGGGUGGCaugagaCGGagggggcgagGGCGGGCGGUGGa -3' miRNA: 3'- -CCUACUGgag---GCCa---------CCGCUCGUCAUC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 33901 | 0.66 | 0.903388 |
Target: 5'- cGGggGccucgcGCCUCCGcGUccGGCGGGCGGa-- -3' miRNA: 3'- -CCuaC------UGGAGGC-CA--CCGCUCGUCauc -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 41173 | 0.68 | 0.821247 |
Target: 5'- uGGUGGuCCUgCGGUGGUcgaGGGgGGUGGg -3' miRNA: 3'- cCUACU-GGAgGCCACCG---CUCgUCAUC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 55356 | 0.66 | 0.908331 |
Target: 5'- cGGG-GGCCUCCgcgagcaGGUGcgcgagcGCGAGCAGgAGg -3' miRNA: 3'- -CCUaCUGGAGG-------CCAC-------CGCUCGUCaUC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 68900 | 0.7 | 0.68871 |
Target: 5'- aGGAcGGCCUCgCGGUcGcGCGGGCGGa-- -3' miRNA: 3'- -CCUaCUGGAG-GCCA-C-CGCUCGUCauc -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 71282 | 0.68 | 0.785768 |
Target: 5'- uGGAgacGGCCUCgGGggccGGCGAGCAc--- -3' miRNA: 3'- -CCUa--CUGGAGgCCa---CCGCUCGUcauc -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 93367 | 0.67 | 0.869189 |
Target: 5'- aGGAUGACggCCGGaGGCGcGCGcUAGu -3' miRNA: 3'- -CCUACUGgaGGCCaCCGCuCGUcAUC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 103719 | 0.66 | 0.909543 |
Target: 5'- cGGAgcugGGCUUCCuGGagccgcUGGCGcGGCAGUGc -3' miRNA: 3'- -CCUa---CUGGAGG-CC------ACCGC-UCGUCAUc -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 112036 | 0.67 | 0.837992 |
Target: 5'- gGGAgcuggGGCCggCGGgcgGGCGgcGGCGGUGGu -3' miRNA: 3'- -CCUa----CUGGagGCCa--CCGC--UCGUCAUC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 114939 | 0.71 | 0.668446 |
Target: 5'- ---cGGCCUCCGG-GGUGGGCGcgaugaugacGUAGg -3' miRNA: 3'- ccuaCUGGAGGCCaCCGCUCGU----------CAUC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 116780 | 0.76 | 0.36483 |
Target: 5'- -cGUGugCUCCagccgcugGGUGGCGAGCgAGUAGa -3' miRNA: 3'- ccUACugGAGG--------CCACCGCUCG-UCAUC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 117180 | 0.66 | 0.897 |
Target: 5'- cGGuagaagGGCCgCCGGggGGCGucguAGUAGUAGa -3' miRNA: 3'- -CCua----CUGGaGGCCa-CCGC----UCGUCAUC- -5' |
|||||||
29611 | 3' | -56.1 | NC_006151.1 | + | 117585 | 0.68 | 0.812614 |
Target: 5'- aGGAUGGg--CCGcGUGGCGccgccGCAGUAGa -3' miRNA: 3'- -CCUACUggaGGC-CACCGCu----CGUCAUC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home