miRNA display CGI


Results 21 - 40 of 453 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29612 3' -51.2 NC_006151.1 + 10693 0.66 0.992454
Target:  5'- cCCCCGugaucacguucgcGCACC-GCGgCGCCAg -3'
miRNA:   3'- -GGGGCuuuuuu-------UGUGGuCGUgGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 5686 0.66 0.991566
Target:  5'- cCCCCGccgugccggcGCugCGGcCACCGCUg -3'
miRNA:   3'- -GGGGCuuuuuu----UGugGUC-GUGGCGGu -5'
29612 3' -51.2 NC_006151.1 + 29103 0.66 0.991449
Target:  5'- gUCCCGGAAAuuu--CCGGgACCGCa- -3'
miRNA:   3'- -GGGGCUUUUuuuguGGUCgUGGCGgu -5'
29612 3' -51.2 NC_006151.1 + 27609 0.66 0.991449
Target:  5'- aCCCGGAAccGGAC-CCgAGCccgGCCGCCc -3'
miRNA:   3'- gGGGCUUUu-UUUGuGG-UCG---UGGCGGu -5'
29612 3' -51.2 NC_006151.1 + 15396 0.66 0.991449
Target:  5'- --aCGAGGAcGACGCCGGCucggacaccACCGUCGc -3'
miRNA:   3'- gggGCUUUUuUUGUGGUCG---------UGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 14122 0.66 0.991449
Target:  5'- -aCCGGGAGAGGCGCgGagcGCGCCccgaGCCGa -3'
miRNA:   3'- ggGGCUUUUUUUGUGgU---CGUGG----CGGU- -5'
29612 3' -51.2 NC_006151.1 + 6220 0.66 0.991449
Target:  5'- uCgCCGGAGGAGccgcgGCGCCGGgagcccuggcUGCCGCCGu -3'
miRNA:   3'- -GgGGCUUUUUU-----UGUGGUC----------GUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 2162 0.66 0.991449
Target:  5'- uCCCCGuccu---CGCCGGgGCCgGCCc -3'
miRNA:   3'- -GGGGCuuuuuuuGUGGUCgUGG-CGGu -5'
29612 3' -51.2 NC_006151.1 + 136600 0.66 0.991449
Target:  5'- gCUCCGc---GAGCACCuGGaCGCCGUCAa -3'
miRNA:   3'- -GGGGCuuuuUUUGUGG-UC-GUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 129489 0.66 0.991449
Target:  5'- uCCUCGGAGGGcAGCGCgGGCgcgaugacgaGCCGCUu -3'
miRNA:   3'- -GGGGCUUUUU-UUGUGgUCG----------UGGCGGu -5'
29612 3' -51.2 NC_006151.1 + 32927 0.66 0.991449
Target:  5'- cCCCCGAG---GAC-CCcGCucCCGCCu -3'
miRNA:   3'- -GGGGCUUuuuUUGuGGuCGu-GGCGGu -5'
29612 3' -51.2 NC_006151.1 + 33592 0.66 0.991449
Target:  5'- aCCaCCGucgg---UACCGGUAUCGCCAg -3'
miRNA:   3'- -GG-GGCuuuuuuuGUGGUCGUGGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 118827 0.66 0.991449
Target:  5'- aCCaCGA---GAGCGCCGuGCugcCCGCCGa -3'
miRNA:   3'- gGG-GCUuuuUUUGUGGU-CGu--GGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 105545 0.66 0.991449
Target:  5'- gCCCGA-----GCugCGGCACgaCGCCc -3'
miRNA:   3'- gGGGCUuuuuuUGugGUCGUG--GCGGu -5'
29612 3' -51.2 NC_006151.1 + 100500 0.66 0.991449
Target:  5'- gCCCGuguuccGGACGCUGuGCGCCGaCCAc -3'
miRNA:   3'- gGGGCuuuu--UUUGUGGU-CGUGGC-GGU- -5'
29612 3' -51.2 NC_006151.1 + 68343 0.66 0.991449
Target:  5'- gCgCGAGucGGAGCG-CAGCAgCCGCCAg -3'
miRNA:   3'- gGgGCUUu-UUUUGUgGUCGU-GGCGGU- -5'
29612 3' -51.2 NC_006151.1 + 56291 0.66 0.991449
Target:  5'- gCCCCGcggcGGAGgcGGACGCCGcGCGgUGCCu -3'
miRNA:   3'- -GGGGC----UUUU--UUUGUGGU-CGUgGCGGu -5'
29612 3' -51.2 NC_006151.1 + 54374 0.66 0.991449
Target:  5'- gCCCGGGAcuGGAuggcGCACCuGCGCgCGCgCGg -3'
miRNA:   3'- gGGGCUUU--UUU----UGUGGuCGUG-GCG-GU- -5'
29612 3' -51.2 NC_006151.1 + 46469 0.66 0.991449
Target:  5'- cCCCCGAcgaGGAAGACuCgGGCGCC-UCGa -3'
miRNA:   3'- -GGGGCU---UUUUUUGuGgUCGUGGcGGU- -5'
29612 3' -51.2 NC_006151.1 + 76612 0.66 0.991449
Target:  5'- gCCCCGAcggcAGGAugGCCGgGCGCU-CCAu -3'
miRNA:   3'- -GGGGCUu---UUUUugUGGU-CGUGGcGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.