miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29614 3' -51.5 NC_006151.1 + 103262 0.66 0.984836
Target:  5'- cGCGCCauggGCgGCCAcGUGCUGagcCAGgAGAc -3'
miRNA:   3'- -CGCGG----CGgCGGUuUAUGAU---GUCaUCU- -5'
29614 3' -51.5 NC_006151.1 + 109658 0.66 0.984278
Target:  5'- cCGCUGCCGCCAccgccgcccccucaGccGCUAUGGgcGAg -3'
miRNA:   3'- cGCGGCGGCGGU--------------UuaUGAUGUCauCU- -5'
29614 3' -51.5 NC_006151.1 + 111428 0.66 0.982917
Target:  5'- aGCGCUGCCGCaucucgGC-GCGGUccaGGAg -3'
miRNA:   3'- -CGCGGCGGCGguuua-UGaUGUCA---UCU- -5'
29614 3' -51.5 NC_006151.1 + 78423 0.66 0.982917
Target:  5'- aGCGCCguggcccacGCCGUCAAccgcGUGCUGCGcgAGGc -3'
miRNA:   3'- -CGCGG---------CGGCGGUU----UAUGAUGUcaUCU- -5'
29614 3' -51.5 NC_006151.1 + 102922 0.66 0.982917
Target:  5'- -gGCgGCCGCCGAGgagcgGCUGCGcgcgcUGGAc -3'
miRNA:   3'- cgCGgCGGCGGUUUa----UGAUGUc----AUCU- -5'
29614 3' -51.5 NC_006151.1 + 100555 0.66 0.982917
Target:  5'- aGCGCCGCCcucacgGCCGGccgcCUGCAGg--- -3'
miRNA:   3'- -CGCGGCGG------CGGUUuau-GAUGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 118059 0.66 0.982917
Target:  5'- cGCGCCG-CGCCGcuggGCUACGuGUAc- -3'
miRNA:   3'- -CGCGGCgGCGGUuua-UGAUGU-CAUcu -5'
29614 3' -51.5 NC_006151.1 + 118121 0.66 0.982716
Target:  5'- gGCGCUGCucguggcgcgcagCGCCGAcgACgccgcgGCGGUGGc -3'
miRNA:   3'- -CGCGGCG-------------GCGGUUuaUGa-----UGUCAUCu -5'
29614 3' -51.5 NC_006151.1 + 109163 0.66 0.982512
Target:  5'- cCGCCGCCGCagccug-UGCAGcUGGAg -3'
miRNA:   3'- cGCGGCGGCGguuuaugAUGUC-AUCU- -5'
29614 3' -51.5 NC_006151.1 + 111391 0.66 0.980821
Target:  5'- uCGCCGCCGCCGGcacccccGCcgggGCGGgAGAc -3'
miRNA:   3'- cGCGGCGGCGGUUua-----UGa---UGUCaUCU- -5'
29614 3' -51.5 NC_006151.1 + 107556 0.66 0.980821
Target:  5'- gGCGCCGCCGCCcgccaaGCccGCGGa--- -3'
miRNA:   3'- -CGCGGCGGCGGuuua--UGa-UGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 120566 0.66 0.980821
Target:  5'- uCGCgGCCGUgAAGcGCUucuCGGUGGAc -3'
miRNA:   3'- cGCGgCGGCGgUUUaUGAu--GUCAUCU- -5'
29614 3' -51.5 NC_006151.1 + 105572 0.66 0.980156
Target:  5'- cGCGCUggcgGCCGCCuucgacgcgcgcgcGGAgcgGCUgccGCGGUGGAu -3'
miRNA:   3'- -CGCGG----CGGCGG--------------UUUa--UGA---UGUCAUCU- -5'
29614 3' -51.5 NC_006151.1 + 48529 0.67 0.978538
Target:  5'- cUGCCGCCGCUgc--GCUAUAaUGGAg -3'
miRNA:   3'- cGCGGCGGCGGuuuaUGAUGUcAUCU- -5'
29614 3' -51.5 NC_006151.1 + 60622 0.67 0.978538
Target:  5'- uCGCCGCCGCCGucguCgggGCGGg--- -3'
miRNA:   3'- cGCGGCGGCGGUuuauGa--UGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 61453 0.67 0.978538
Target:  5'- cGCGuCCGCCGCCAuGUGCggGCc----- -3'
miRNA:   3'- -CGC-GGCGGCGGUuUAUGa-UGucaucu -5'
29614 3' -51.5 NC_006151.1 + 66440 0.67 0.978538
Target:  5'- uCGCCGCC-CCAcAGUGCcaccagACGGUGGu -3'
miRNA:   3'- cGCGGCGGcGGU-UUAUGa-----UGUCAUCu -5'
29614 3' -51.5 NC_006151.1 + 86088 0.67 0.978538
Target:  5'- cGCGCCGCCGCCGccAUGggGCccguGUAc- -3'
miRNA:   3'- -CGCGGCGGCGGUu-UAUgaUGu---CAUcu -5'
29614 3' -51.5 NC_006151.1 + 140297 0.67 0.978538
Target:  5'- uGCGCCGgCGCCGc---CUGCGGg--- -3'
miRNA:   3'- -CGCGGCgGCGGUuuauGAUGUCaucu -5'
29614 3' -51.5 NC_006151.1 + 35246 0.67 0.97606
Target:  5'- -gGCCGCCGCgGGGgccggACaUGCAaaGUAGAc -3'
miRNA:   3'- cgCGGCGGCGgUUUa----UG-AUGU--CAUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.