miRNA display CGI


Results 21 - 40 of 232 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29615 3' -62.2 NC_006151.1 + 94663 0.66 0.638044
Target:  5'- cCAGCgGguGCCCGGcGGGCagcucCCCGAaGGCCg -3'
miRNA:   3'- -GUCGgC--UGGGCU-CUCG-----GGGCUcUCGG- -5'
29615 3' -62.2 NC_006151.1 + 117922 0.66 0.638044
Target:  5'- -cGCCgGACCCGuccGCCCgGAGAGg- -3'
miRNA:   3'- guCGG-CUGGGCucuCGGGgCUCUCgg -5'
29615 3' -62.2 NC_006151.1 + 26176 0.66 0.637063
Target:  5'- gGGCCGggagggaaaaaacGCCCGAGAGaCgaGAGAGUUg -3'
miRNA:   3'- gUCGGC-------------UGGGCUCUCgGggCUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 131616 0.66 0.635101
Target:  5'- gGGCCGGCCCGcGGcuuuauacGCCCCacccacagguggucGGGcGCCg -3'
miRNA:   3'- gUCGGCUGGGCuCU--------CGGGG--------------CUCuCGG- -5'
29615 3' -62.2 NC_006151.1 + 6524 0.66 0.628234
Target:  5'- aUAGCCG-CCgGAGAGCC---GGAGUCu -3'
miRNA:   3'- -GUCGGCuGGgCUCUCGGggcUCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 83426 0.66 0.628234
Target:  5'- -uGCCG-CCgGGGGGCucCCCGGGcagcguGGCCg -3'
miRNA:   3'- guCGGCuGGgCUCUCG--GGGCUC------UCGG- -5'
29615 3' -62.2 NC_006151.1 + 122175 0.66 0.628234
Target:  5'- gCGGCgGGCUCGuGGuGCCgCCG-GAGCUg -3'
miRNA:   3'- -GUCGgCUGGGCuCU-CGG-GGCuCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 18565 0.66 0.628234
Target:  5'- aGGCCG-CCCGgcggcgGGAGCaCagcaCGcAGAGCCa -3'
miRNA:   3'- gUCGGCuGGGC------UCUCG-Gg---GC-UCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 21479 0.66 0.628234
Target:  5'- -cGCCGGCUCGGGcaGGCggCCgGGGGGCg -3'
miRNA:   3'- guCGGCUGGGCUC--UCG--GGgCUCUCGg -5'
29615 3' -62.2 NC_006151.1 + 125251 0.66 0.628234
Target:  5'- --cCCGGCCCGgcGGGGaCgCCCGAGccgccGGCCg -3'
miRNA:   3'- gucGGCUGGGC--UCUC-G-GGGCUC-----UCGG- -5'
29615 3' -62.2 NC_006151.1 + 5808 0.66 0.628234
Target:  5'- gGGCUG--CCGAGGGgCCgGgAGAGCCg -3'
miRNA:   3'- gUCGGCugGGCUCUCgGGgC-UCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 46555 0.66 0.627253
Target:  5'- aGGCCGGcgcccaggcgcucCCCGcgcAGGGCCCgaCGGGcGGCCg -3'
miRNA:   3'- gUCGGCU-------------GGGC---UCUCGGG--GCUC-UCGG- -5'
29615 3' -62.2 NC_006151.1 + 86537 0.66 0.618426
Target:  5'- -cGCCucGCCCGAG-GCCgCCGuGGcGCCg -3'
miRNA:   3'- guCGGc-UGGGCUCuCGG-GGCuCU-CGG- -5'
29615 3' -62.2 NC_006151.1 + 66889 0.66 0.618426
Target:  5'- cCGGCCccgcGCCgGAGGacGCCgCCGAGgagGGCCa -3'
miRNA:   3'- -GUCGGc---UGGgCUCU--CGG-GGCUC---UCGG- -5'
29615 3' -62.2 NC_006151.1 + 126435 0.66 0.618426
Target:  5'- -cGCCGGCacuaCcAGcGCCUCGAGAGCg -3'
miRNA:   3'- guCGGCUGg---GcUCuCGGGGCUCUCGg -5'
29615 3' -62.2 NC_006151.1 + 57824 0.66 0.618426
Target:  5'- cCAGCCaGGCCCcgcgGAGGGCgCaCGGGuGCUc -3'
miRNA:   3'- -GUCGG-CUGGG----CUCUCGgG-GCUCuCGG- -5'
29615 3' -62.2 NC_006151.1 + 57755 0.66 0.618426
Target:  5'- gCAGCCG-CUCGuG-GCCCgGgcacAGGGCCa -3'
miRNA:   3'- -GUCGGCuGGGCuCuCGGGgC----UCUCGG- -5'
29615 3' -62.2 NC_006151.1 + 56218 0.66 0.618426
Target:  5'- -cGCCuGGCCCuGGugcGCCCCGAGGaCCc -3'
miRNA:   3'- guCGG-CUGGGcUCu--CGGGGCUCUcGG- -5'
29615 3' -62.2 NC_006151.1 + 40038 0.66 0.618426
Target:  5'- -cGCCGcCgCCGGGGGCgCCGuGGAGaCCc -3'
miRNA:   3'- guCGGCuG-GGCUCUCGgGGC-UCUC-GG- -5'
29615 3' -62.2 NC_006151.1 + 48481 0.66 0.618426
Target:  5'- gAGgCGGCCCugaaGGAGCUCgGAGAggugGCCg -3'
miRNA:   3'- gUCgGCUGGGc---UCUCGGGgCUCU----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.