miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29616 5' -50.9 NC_006151.1 + 98200 0.66 0.990307
Target:  5'- ---cGCGCCgcgCGGGGUC-GAGUGcGCg -3'
miRNA:   3'- cuucUGUGGa--GUCUCAGuCUCACaCG- -5'
29616 5' -50.9 NC_006151.1 + 30274 0.66 0.990307
Target:  5'- -cAGACAgCggcgCGGGGggAGGGUGUGUa -3'
miRNA:   3'- cuUCUGUgGa---GUCUCagUCUCACACG- -5'
29616 5' -50.9 NC_006151.1 + 17364 0.66 0.990307
Target:  5'- aGAAcGGCGCCgUGGGGUCGGAccGUGUccGCa -3'
miRNA:   3'- -CUU-CUGUGGaGUCUCAGUCU--CACA--CG- -5'
29616 5' -50.9 NC_006151.1 + 46487 0.66 0.98893
Target:  5'- -cGGGCGCCUC-GAG-CAGcGGgGUGCa -3'
miRNA:   3'- cuUCUGUGGAGuCUCaGUC-UCaCACG- -5'
29616 5' -50.9 NC_006151.1 + 7675 0.66 0.985724
Target:  5'- cGAGGGCGCCcCAGccGGUCGGAGagacgaGCg -3'
miRNA:   3'- -CUUCUGUGGaGUC--UCAGUCUCaca---CG- -5'
29616 5' -50.9 NC_006151.1 + 44396 0.66 0.985724
Target:  5'- cGggGGCGCCgaggAGGGagGGGcgcGUGUGCa -3'
miRNA:   3'- -CuuCUGUGGag--UCUCagUCU---CACACG- -5'
29616 5' -50.9 NC_006151.1 + 127911 0.67 0.97724
Target:  5'- cGggGGCcCCUCGGGGagCGGGGgcgGCg -3'
miRNA:   3'- -CuuCUGuGGAGUCUCa-GUCUCacaCG- -5'
29616 5' -50.9 NC_006151.1 + 106444 0.67 0.974634
Target:  5'- cGAGGGCcgcuUCUCGGAGaCGGAGcUGUGg -3'
miRNA:   3'- -CUUCUGu---GGAGUCUCaGUCUC-ACACg -5'
29616 5' -50.9 NC_006151.1 + 111230 0.68 0.958302
Target:  5'- cGAGGCGCCgCAGccccAGg-AGGGUGUGCa -3'
miRNA:   3'- cUUCUGUGGaGUC----UCagUCUCACACG- -5'
29616 5' -50.9 NC_006151.1 + 21044 0.7 0.907063
Target:  5'- aGAGGACGCCcccgacgcgCGGGGUCAGGGcG-GCc -3'
miRNA:   3'- -CUUCUGUGGa--------GUCUCAGUCUCaCaCG- -5'
29616 5' -50.9 NC_006151.1 + 3389 0.73 0.794338
Target:  5'- cGAGGGcCGCCUCGGAGggccgCGGcGUGUGg -3'
miRNA:   3'- -CUUCU-GUGGAGUCUCa----GUCuCACACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.