miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29618 3' -59.3 NC_006151.1 + 9142 0.66 0.778459
Target:  5'- cCCG-CGGCAcgcgcccagaccuUCCucUC-CCCCCUCCACc -3'
miRNA:   3'- -GGCaGCUGU-------------AGGc-AGcGGGGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 137638 0.66 0.770331
Target:  5'- uCCGcCcuCGUCCG-CGCCCCCgUCCcgGCg -3'
miRNA:   3'- -GGCaGcuGUAGGCaGCGGGGG-AGG--UG- -5'
29618 3' -59.3 NC_006151.1 + 13747 0.66 0.770331
Target:  5'- cCCGUCccGCGggCCGgacCGCCCCCUUCcCg -3'
miRNA:   3'- -GGCAGc-UGUa-GGCa--GCGGGGGAGGuG- -5'
29618 3' -59.3 NC_006151.1 + 67207 0.66 0.770331
Target:  5'- uCCG-CGGCAUCCG-CGUcggcuacacggCCCacaUCCGCa -3'
miRNA:   3'- -GGCaGCUGUAGGCaGCG-----------GGGg--AGGUG- -5'
29618 3' -59.3 NC_006151.1 + 122987 0.66 0.768512
Target:  5'- gCGUCGGCGacgaagacgggcCCGgcgCGCCCCCgCCGg -3'
miRNA:   3'- gGCAGCUGUa-----------GGCa--GCGGGGGaGGUg -5'
29618 3' -59.3 NC_006151.1 + 38999 0.67 0.761191
Target:  5'- gCCG-CG-CG-CCGcggCGCCCCgCUCCGCc -3'
miRNA:   3'- -GGCaGCuGUaGGCa--GCGGGG-GAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 14395 0.67 0.755655
Target:  5'- -gGUCGcGCGUCCGUCGCCUaggugagucggggggCUUCC-Cg -3'
miRNA:   3'- ggCAGC-UGUAGGCAGCGGG---------------GGAGGuG- -5'
29618 3' -59.3 NC_006151.1 + 87101 0.67 0.755655
Target:  5'- gCCGcCGugGUCuCGUCGCUCCagcgcgagaucagCCACc -3'
miRNA:   3'- -GGCaGCugUAG-GCAGCGGGGga-----------GGUG- -5'
29618 3' -59.3 NC_006151.1 + 34194 0.67 0.751944
Target:  5'- cCCGUCGcCAUCU-UgGCuCCCCUCCc- -3'
miRNA:   3'- -GGCAGCuGUAGGcAgCG-GGGGAGGug -5'
29618 3' -59.3 NC_006151.1 + 134524 0.67 0.742599
Target:  5'- uCCG-CGGCAU-CGUCGUCUUCcCCACg -3'
miRNA:   3'- -GGCaGCUGUAgGCAGCGGGGGaGGUG- -5'
29618 3' -59.3 NC_006151.1 + 131313 0.67 0.733163
Target:  5'- cUCGUCc-CcgUCGUCGuCCCCCUCCuCa -3'
miRNA:   3'- -GGCAGcuGuaGGCAGC-GGGGGAGGuG- -5'
29618 3' -59.3 NC_006151.1 + 142251 0.67 0.733163
Target:  5'- gCGUCGGuCAUCgCGgcgaggagCGCCCCgUCCcgGCg -3'
miRNA:   3'- gGCAGCU-GUAG-GCa-------GCGGGGgAGG--UG- -5'
29618 3' -59.3 NC_006151.1 + 62071 0.67 0.733163
Target:  5'- gCCGUCGugAcgaaCGUCGUCCUCggCGCg -3'
miRNA:   3'- -GGCAGCugUag--GCAGCGGGGGagGUG- -5'
29618 3' -59.3 NC_006151.1 + 48697 0.67 0.733163
Target:  5'- gCCGgccCGACccUCCGcCGCCgCCCggcCCGCg -3'
miRNA:   3'- -GGCa--GCUGu-AGGCaGCGG-GGGa--GGUG- -5'
29618 3' -59.3 NC_006151.1 + 58708 0.67 0.733163
Target:  5'- gCGcCGG-GUCCGccagCGCCCCCgugCCGCu -3'
miRNA:   3'- gGCaGCUgUAGGCa---GCGGGGGa--GGUG- -5'
29618 3' -59.3 NC_006151.1 + 131262 0.67 0.723646
Target:  5'- cCCGUCGGaccaCG-CGCCCCCcUCGCu -3'
miRNA:   3'- -GGCAGCUguagGCaGCGGGGGaGGUG- -5'
29618 3' -59.3 NC_006151.1 + 19765 0.67 0.723646
Target:  5'- gCCGUCGAgGUCauCGUCGCCggCCUCgGu -3'
miRNA:   3'- -GGCAGCUgUAG--GCAGCGGg-GGAGgUg -5'
29618 3' -59.3 NC_006151.1 + 100358 0.67 0.723646
Target:  5'- aCGUCGugGacgCCGUgGgCgCCUUCCGCg -3'
miRNA:   3'- gGCAGCugUa--GGCAgCgG-GGGAGGUG- -5'
29618 3' -59.3 NC_006151.1 + 97948 0.67 0.723646
Target:  5'- cUCGUCGAgGgcgagCCa-CGCCUCCUCCAg -3'
miRNA:   3'- -GGCAGCUgUa----GGcaGCGGGGGAGGUg -5'
29618 3' -59.3 NC_006151.1 + 34235 0.67 0.723646
Target:  5'- cCCGaCGAgGccgagCCGgucucgCGCCCCCUCC-Cg -3'
miRNA:   3'- -GGCaGCUgUa----GGCa-----GCGGGGGAGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.